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[WIP] NORDIC denoising on dMRI images #129

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[WIP] NORDIC denoising on dMRI images #129

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@PaulBautin PaulBautin commented Sep 4, 2024 •
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Implements NORDIC denoising for application on dMRI images:

  • added flag -dwi_phase, to input phase images necessary for NORDIC denoising. If -dwi_phase has an input then NORDIC denoising is applied else -dwi_phase has no input (DEFAULT or manual) then pipeline is ran as previously.

Notes:

  • For the moment -dwi_phase image order must correspond to -dwi_main magnitude image order

TODO:

  • NORDIC matlab repo must be added as export in init.sh and any micapipe script. (was added to Dockerfile)

PR associated with issue #127

@PaulBautin PaulBautin changed the title NORDIC denoising on dMRI images [WIP] NORDIC denoising on dMRI images Sep 4, 2024
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PaulBautin commented Sep 6, 2024 •
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This is the comparison of NORDIC and previous denoising method after full pre-processing!:
image

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