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@rcruces rcruces released this 03 Nov 22:04
· 714 commits to master since this release

Update FSL from 6.0.0 to 6.0.3
mica-pipe command goes to micapipe
To print help should specify it with the flag micapipe -h or micapipe -help
post_structural will always run schefer-400 by default if is not included in the -atlas list
proc_rsfmri is deprecated and replaced by proc_func
proc_func handles more than one functional acquisition (e.g. tasks), as well as multi echo data (tedana https://github.com/ME-ICA/tedana).
proc_func Added option to drop the first 5 TRs -dropTR (by default is not dropped)
proc_func Added option to not run the functional connectomes -noFC (only func surface data)
proc_func Added 6 parameters of motion to the regression of -regress_WM_CSF (func~spikes+6motion+wm+csf)
proc_func Added 6 parameters of motion to the regression of -GSR (func~spikes+6motion+wm+csf+gs)
MPC can processes more than one quantitative map (at a time) with the flag -mpc_acq <qMRI_name>
micapipe_cleanup can be called from micapipe command: micapipe -cleanup
micapipe -cleanup uses the string -acqStr to erase multiple acquisitions of -proc_func and -MPC
Improved comments and print logs of -proc_func and FC.py
proc_func generates new jsons files of each acquisition with metadata about processing and completion status
proc_func exit status when Melodic/FIX fail
-QC_subj is not compatible with proc_func yet.... or with MPC multiple acquisitions but it is still with the old proc_rsfmri outputs
NOTE: the read the docs is not updated yet.