v0.1.4
Update FSL from 6.0.0 to 6.0.3
mica-pipe
command goes to micapipe
To print help should specify it with the flag micapipe -h
or micapipe -help
post_structural
will always run schefer-400 by default if is not included in the -atlas
list
proc_rsfmri
is deprecated and replaced by proc_func
proc_func
handles more than one functional acquisition (e.g. tasks), as well as multi echo data (tedana https://github.com/ME-ICA/tedana).
proc_func
Added option to drop the first 5 TRs -dropTR (by default is not dropped)
proc_func
Added option to not run the functional connectomes -noFC (only func surface data)
proc_func
Added 6 parameters of motion to the regression of -regress_WM_CSF (func~spikes+6motion+wm+csf)
proc_func
Added 6 parameters of motion to the regression of -GSR (func~spikes+6motion+wm+csf+gs)
MPC
can processes more than one quantitative map (at a time) with the flag -mpc_acq <qMRI_name>
micapipe_cleanup
can be called from micapipe
command: micapipe -cleanup
micapipe -cleanup
uses the string -acqStr
to erase multiple acquisitions of -proc_func
and -MPC
Improved comments and print logs of -proc_func
and FC.py
proc_func
generates new jsons files of each acquisition with metadata about processing and completion status
proc_func
exit status when Melodic/FIX fail
-QC_subj
is not compatible with proc_func
yet.... or with MPC multiple acquisitions but it is still with the old proc_rsfmri
outputs
NOTE: the read the docs is not updated yet.