Copy RSV target-data #17
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Copy RSV target-data | |
on: | |
workflow_dispatch: | |
schedule: | |
- cron: '10 9 * * 5' | |
# 10 minites after started update-rsv-data on rsv-forecast-hub | |
jobs: | |
copy-files: | |
runs-on: ubuntu-latest | |
name: Copy Files | |
steps: | |
- name: Checkout Repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 1 | |
path: ./rsv-forecast-hub | |
- name: Remove old rsvnet hospitalization data | |
run: rm ./rsv-forecast-hub/target-data/*_rsvnet_hospitalization.csv || true | |
- name: Copy files | |
run: | | |
mkdir -p ./rsv-forecast-hub/target-data/archive/ | |
chmod +w ./rsv-forecast-hub/target-data/ | |
FILES=$(curl -s https://api.github.com/repos/midas-network/rsv-scenario-modeling-hub/git/trees/main?recursive=1 | jq -r '.tree[] | select(.path | startswith("target-data/")) | .path') | |
for file in $FILES | |
do | |
FILENAME=$(basename $file) | |
if [[ $file == *_rsvnet_hospitalization.csv && $file != *archive* ]]; then | |
if [[ ! -f ./rsv-forecast-hub/target-data/$FILENAME ]]; then | |
curl -o ./rsv-forecast-hub/target-data/$FILENAME https://raw.githubusercontent.com/midas-network/rsv-scenario-modeling-hub/main/$file | |
fi | |
elif [[ $file == *_rsvnet_hospitalization.csv && $file == *archive* ]]; then | |
if [[ ! -f ./rsv-forecast-hub/target-data/archive/$FILENAME ]]; then | |
curl -o ./rsv-forecast-hub/target-data/archive/$FILENAME https://raw.githubusercontent.com/midas-network/rsv-scenario-modeling-hub/main/$file | |
fi | |
fi | |
done | |
- name: Commit and push repository update | |
run: | | |
cd ./rsv-forecast-hub | |
git config user.name "github-actions[bot]" | |
git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
if [ -n "$(git status --porcelain)" ]; then | |
git add . | |
git commit -m "Download truth data file from RSV repo" | |
git push | |
last_commit=$(git rev-parse HEAD) | |
echo "RSV-Net data updated"; | |
else | |
echo "no updates"; | |
fi |