Add unit testing #6
Workflow file for this run
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| # This is a CI workflow for the fv3atm project. | |
| # | |
| # This workflow checks code coverage and will build documentation. | |
| # | |
| # Alex Richert, 11 Jan 2024 | |
| name: developer | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| pull_request: | |
| branches: | |
| - develop | |
| jobs: | |
| developer: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: apt-install | |
| run: | | |
| sudo apt install gcovr | |
| - name: checkout-fv3atm | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ${{ github.workspace }}/fv3atm | |
| submodules: recursive | |
| - name: cache-spack | |
| id: cache-spack | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/spack-develop | |
| key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc11-2 | |
| # Building dependencies takes 40+ min | |
| - name: spack-install | |
| if: steps.cache-spack.outputs.cache-hit != 'true' | |
| run: | | |
| wget --no-verbose https://github.com/spack/spack/archive/refs/heads/develop.zip | |
| unzip develop.zip -d ${GITHUB_WORKSPACE}/ &> unzip.out | |
| . ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
| spack env create gcc11 ${GITHUB_WORKSPACE}/fv3atm/ci/spack.yaml | |
| spack env activate gcc11 | |
| spack compiler find | grep gcc@11 | |
| spack external find gmake cmake git git-lfs perl python mpich | |
| spack config add "packages:all:require:['%gcc@11']" | |
| spack config add "packages:mpi:require:'mpich'" | |
| spack concretize |& tee ${SPACK_ENV}/log.concretize | |
| spack install -j2 --fail-fast | |
| - name: cache-save | |
| uses: actions/cache/save@v3 | |
| if: ${{ always() }} | |
| with: | |
| path: ${{ github.workspace }}/spack-develop | |
| key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc11-2 | |
| - name: build-fv3atm | |
| run: | | |
| . ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh | |
| spack env activate gcc11 | |
| spack load $(spack find --format "{name}") | |
| cd ${GITHUB_WORKSPACE}/fv3atm | |
| git clone https://github.com/NOAA-EMC/CMakeModules | |
| git clone --recurse-submodules https://github.com/NOAA-PSL/stochastic_physics stochastic_physics_repo | |
| mkdir ${GITHUB_WORKSPACE}/fv3atm/build | |
| cd ${GITHUB_WORKSPACE}/fv3atm/build | |
| cmake ${GITHUB_WORKSPACE}/fv3atm -DBUILD_TESTING=ON -DCMAKE_Fortran_FLAGS="-fprofile-abs-path -fprofile-arcs -ftest-coverage -O0" | |
| make -j2 | |
| - name: run-tests | |
| run: | | |
| cd $GITHUB_WORKSPACE/fv3atm/build | |
| ctest -j2 --output-on-failure --rerun-failed | |
| - name: get-test-coverage | |
| run: | | |
| f=${GITHUB_WORKSPACE}/fv3atm | |
| cd $f/build | |
| gcovr -r .. -v --html-details --exclude ${f}/tests --exclude $f/stochastic_physics_repo --exclude $f/build/ccpp --exclude $f/ccpp/physics --exclude $f/ccpp/framework --exclude $f/atmos_cubed_sphere --exclude CMakeFiles --print-summary -o test-coverage.html | |
| - name: upload-test-coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-coverage-fv3atm-${{ github.sha }} | |
| path: | | |
| ${{ github.workspace }}/fv3atm/build/*.html | |
| ${{ github.workspace }}/fv3atm/build/*.css | |
| - name: debug-artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ failure() }} | |
| with: | |
| name: ccpp_prebuild_logs | |
| path: ${{ github.workspace }}/fv3atm/build/ccpp/ccpp_prebuild.* |