Added changes from dev branch and additional changes that got optimization running with zero test failing #41
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| name: Static Analysis | |
| on: pull_request | |
| env: | |
| CMAKE_VERSION: 3.21.1 | |
| NINJA_VERSION: 1.10.2 | |
| CCACHE_VERSION: 4.4 | |
| jobs: | |
| build: | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| BUILD_TYPE: ${{ matrix.config.buildtype }} | |
| BUILD_FLAGS: ${{ matrix.config.buildflags}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { | |
| name: "Ubuntu Latest Clang", artifact: "Linux.tar.xz", | |
| os: ubuntu-latest, | |
| cc: "clang", cxx: "clang++", | |
| buildtype: "Debug", | |
| buildflags: "-fno-openmp", | |
| } | |
| steps: | |
| - name: Clone MISO | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - name: Download Ninja | |
| id: cmake_and_ninja | |
| shell: cmake -P {0} | |
| run: | | |
| set(cmake_version $ENV{CMAKE_VERSION}) | |
| set(ninja_version $ENV{NINJA_VERSION}) | |
| message(STATUS "Using host CMake version: ${CMAKE_VERSION}") | |
| if ("${{ runner.os }}" STREQUAL "Linux") | |
| set(ninja_suffix "linux.zip") | |
| set(cmake_suffix "linux-x86_64.tar.gz") | |
| set(cmake_dir "cmake-${cmake_version}-linux-x86_64/bin") | |
| elseif ("${{ runner.os }}" STREQUAL "macOS") | |
| set(ninja_suffix "mac.zip") | |
| set(cmake_suffix "macos-universal.tar.gz") | |
| set(cmake_dir "cmake-${cmake_version}-macos-universal/CMake.app/Contents/bin") | |
| endif() | |
| set(ninja_url "https://github.com/ninja-build/ninja/releases/download/v${ninja_version}/ninja-${ninja_suffix}") | |
| file(DOWNLOAD "${ninja_url}" ./ninja.zip SHOW_PROGRESS) | |
| execute_process(COMMAND ${CMAKE_COMMAND} -E tar xvf ./ninja.zip) | |
| set(cmake_url "https://github.com/Kitware/CMake/releases/download/v${cmake_version}/cmake-${cmake_version}-${cmake_suffix}") | |
| file(DOWNLOAD "${cmake_url}" ./cmake.zip SHOW_PROGRESS) | |
| execute_process(COMMAND ${CMAKE_COMMAND} -E tar xvf ./cmake.zip) | |
| # Add to PATH environment variable | |
| file(TO_CMAKE_PATH "$ENV{GITHUB_WORKSPACE}/${cmake_dir}" cmake_dir) | |
| set(path_separator ":") | |
| file(APPEND "$ENV{GITHUB_PATH}" "$ENV{GITHUB_WORKSPACE}${path_separator}${cmake_dir}") | |
| execute_process( | |
| COMMAND chmod +x ninja | |
| COMMAND chmod +x ${cmake_dir}/cmake | |
| ) | |
| - name: Download clang-tidy | |
| id: cland-tidy-download | |
| run: sudo apt-get install clang-tidy | |
| - name: Download OpenMPI | |
| id: openmpi | |
| run: sudo apt-get install openmpi-bin openmpi-common openmpi-doc libopenmpi-dev | |
| - name: Download Metis | |
| id: metis | |
| run: brew install metis | |
| # run: sudo apt-get install metis libmetis-dev | |
| - name: Download ccache | |
| id: ccache | |
| # run: sudo apt-get install ccache | |
| run: brew install ccache | |
| - name: Prepare ccache timestamp | |
| id: ccache_cache_timestamp | |
| shell: cmake -P {0} | |
| run: | | |
| string(TIMESTAMP current_date "%Y-%m-%d-%H;%M;%S" UTC) | |
| message("::set-output name=timestamp::${current_date}") | |
| - name: ccache cache files | |
| uses: actions/[email protected] | |
| with: | |
| path: .ccache | |
| key: ${{ matrix.config.name }}-ccache-${{ steps.ccache_cache_timestamp.outputs.timestamp }} | |
| restore-keys: | | |
| ${{ matrix.config.name }}-ccache- | |
| - name: Download Adept | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: 'rjhogan/Adept-2' | |
| path: .deps/adept | |
| - name: Configure Adept | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/.deps/adept/ | |
| autoreconf -i | |
| ./configure --prefix="${GITHUB_WORKSPACE}/.deps/adept/install" \ | |
| --with-blas=blas \ | |
| --with-lapack=lapack \ | |
| --disable-openmp \ | |
| CC="ccache ${{matrix.config.cc}}" \ | |
| CXX="ccache ${{matrix.config.cxx}}" \ | |
| - name: Build Adept | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/.deps/adept/ | |
| CC="ccache ${{matrix.config.cc}}" CXX="ccache ${{matrix.config.cxx}}" make -j 2 | |
| # CC="ccache ${{matrix.config.cc}}" CXX="ccache ${{matrix.config.cxx}}" make check | |
| make install | |
| - name: Download Hypre | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: 'hypre-space/hypre' | |
| ref: 'v2.20.0' | |
| path: .deps/hypre | |
| - name: Create Hypre Build Environment | |
| run: cmake -E make_directory ${GITHUB_WORKSPACE}/.deps/hypre/src/build | |
| - name: Configure Hypre | |
| shell: cmake -P {0} | |
| run: | | |
| set(ENV{CC} ${{ matrix.config.cc }}) | |
| set(ENV{CXX} ${{ matrix.config.cxx }}) | |
| set(path_separator ":") | |
| set(ENV{PATH} "$ENV{GITHUB_WORKSPACE}${path_separator}$ENV{PATH}") | |
| execute_process( | |
| COMMAND cmake | |
| -S $ENV{GITHUB_WORKSPACE}/.deps/hypre/src | |
| -B $ENV{GITHUB_WORKSPACE}/.deps/hypre/src/build | |
| -D CMAKE_BUILD_TYPE=$ENV{BUILD_TYPE} | |
| -G Ninja | |
| -D CMAKE_MAKE_PROGRAM=ninja | |
| -D CMAKE_C_COMPILER_LAUNCHER=ccache | |
| -D CMAKE_CXX_COMPILER_LAUNCHER=ccache | |
| -D CMAKE_POSITION_INDEPENDENT_CODE=ON | |
| -D CMAKE_INSTALL_PREFIX=. | |
| RESULT_VARIABLE result | |
| ) | |
| if (NOT result EQUAL 0) | |
| message(FATAL_ERROR "Bad exit status") | |
| endif() | |
| - name: Build Hypre | |
| shell: cmake -P {0} | |
| run: | | |
| set(ENV{NINJA_STATUS} "[%f/%t %o/sec] ") | |
| file(TO_CMAKE_PATH "$ENV{GITHUB_WORKSPACE}" ccache_basedir) | |
| set(ENV{CCACHE_BASEDIR} "${ccache_basedir}") | |
| set(ENV{CCACHE_DIR} "${ccache_basedir}/.ccache") | |
| set(ENV{CCACHE_COMPRESS} "true") | |
| set(ENV{CCACHE_COMPRESSLEVEL} "6") | |
| set(ENV{CCACHE_MAXSIZE} "1000M") | |
| if ("${{ matrix.config.cxx }}" STREQUAL "cl") | |
| set(ENV{CCACHE_MAXSIZE} "1000M") | |
| endif() | |
| execute_process(COMMAND ccache -p) | |
| execute_process(COMMAND ccache -z) | |
| execute_process( | |
| COMMAND cmake --build $ENV{GITHUB_WORKSPACE}/.deps/hypre/src/build | |
| RESULT_VARIABLE result | |
| OUTPUT_VARIABLE output | |
| ERROR_VARIABLE output | |
| ECHO_OUTPUT_VARIABLE ECHO_ERROR_VARIABLE | |
| ) | |
| if (NOT result EQUAL 0) | |
| string(REGEX MATCH "FAILED:.*$" error_message "${output}") | |
| string(REPLACE "\n" "%0A" error_message "${error_message}") | |
| message("::error::${error_message}") | |
| message(FATAL_ERROR "Build failed") | |
| endif() | |
| - name: Install Hypre | |
| run: cmake --build ${GITHUB_WORKSPACE}/.deps/hypre/src/build --config $BUILD_TYPE --target install | |
| - name: Download MFEM | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: 'mfem/mfem' | |
| ref: 'odl-next' | |
| path: .deps/mfem | |
| - name: Create MFEM Build Environment | |
| run: cmake -E make_directory ${GITHUB_WORKSPACE}/.deps/mfem/build | |
| - name: Configure MFEM | |
| shell: cmake -P {0} | |
| run: | | |
| set(ENV{CC} ${{ matrix.config.cc }}) | |
| set(ENV{CXX} ${{ matrix.config.cxx }}) | |
| set(path_separator ":") | |
| set(ENV{PATH} "$ENV{GITHUB_WORKSPACE}${path_separator}$ENV{PATH}") | |
| execute_process( | |
| COMMAND brew --prefix metis | |
| OUTPUT_VARIABLE metis-dir | |
| ) | |
| execute_process( | |
| COMMAND cmake | |
| -S $ENV{GITHUB_WORKSPACE}/.deps/mfem/ | |
| -B $ENV{GITHUB_WORKSPACE}/.deps/mfem/build | |
| -D CMAKE_BUILD_TYPE=$ENV{BUILD_TYPE} | |
| -G Ninja | |
| -D CMAKE_MAKE_PROGRAM=ninja | |
| -D CMAKE_C_COMPILER_LAUNCHER=ccache | |
| -D CMAKE_CXX_COMPILER_LAUNCHER=ccache | |
| -D CMAKE_POSITION_INDEPENDENT_CODE=ON | |
| -D MFEM_USE_MPI=YES | |
| -D MFEM_USE_METIS_5=YES | |
| -D HYPRE_DIR=../hypre | |
| -D METIS_DIR=/home/linuxbrew/.linuxbrew/opt/metis | |
| -D MFEM_ENABLE_EXAMPLES=NO | |
| -D MFEM_ENABLE_MINIAPPS=NO | |
| RESULT_VARIABLE result | |
| ) | |
| if (NOT result EQUAL 0) | |
| message(FATAL_ERROR "Bad exit status") | |
| endif() | |
| - name: Build MFEM | |
| shell: cmake -P {0} | |
| run: | | |
| set(ENV{NINJA_STATUS} "[%f/%t %o/sec] ") | |
| file(TO_CMAKE_PATH "$ENV{GITHUB_WORKSPACE}" ccache_basedir) | |
| set(ENV{CCACHE_BASEDIR} "${ccache_basedir}") | |
| set(ENV{CCACHE_DIR} "${ccache_basedir}/.ccache") | |
| set(ENV{CCACHE_COMPRESS} "true") | |
| set(ENV{CCACHE_COMPRESSLEVEL} "6") | |
| set(ENV{CCACHE_MAXSIZE} "1000M") | |
| if ("${{ matrix.config.cxx }}" STREQUAL "cl") | |
| set(ENV{CCACHE_MAXSIZE} "1000M") | |
| endif() | |
| # execute_process(COMMAND ccache -p) | |
| # execute_process(COMMAND ccache -z) | |
| execute_process( | |
| COMMAND cmake --build $ENV{GITHUB_WORKSPACE}/.deps/mfem/build | |
| RESULT_VARIABLE result | |
| OUTPUT_VARIABLE output | |
| ERROR_VARIABLE output | |
| ECHO_OUTPUT_VARIABLE ECHO_ERROR_VARIABLE | |
| ) | |
| if (NOT result EQUAL 0) | |
| string(REGEX MATCH "FAILED:.*$" error_message "${output}") | |
| string(REPLACE "\n" "%0A" error_message "${error_message}") | |
| message("::error::${error_message}") | |
| message(FATAL_ERROR "Build failed") | |
| endif() | |
| # - name: Clone MISO | |
| # uses: actions/checkout@v2 | |
| # with: | |
| # # path: miso | |
| # fetch-depth: 2 | |
| - name: Create MISO Build Environment | |
| run: cmake -E make_directory ${GITHUB_WORKSPACE}/build | |
| - name: Generate Compile Commands | |
| shell: cmake -P {0} | |
| run: | | |
| set(ENV{CC} ${{ matrix.config.cc }}) | |
| set(ENV{CXX} ${{ matrix.config.cxx }}) | |
| set(path_separator ":") | |
| set(ENV{PATH} "$ENV{GITHUB_WORKSPACE}${path_separator}$ENV{PATH}") | |
| execute_process( | |
| COMMAND cmake | |
| -S . | |
| -B build | |
| -D CMAKE_BUILD_TYPE=$ENV{BUILD_TYPE} | |
| -G Ninja | |
| -D CMAKE_MAKE_PROGRAM=ninja | |
| -D CMAKE_C_COMPILER_LAUNCHER=ccache | |
| -D CMAKE_CXX_COMPILER_LAUNCHER=ccache | |
| -D CMAKE_POSITION_INDEPENDENT_CODE=ON | |
| -D CMAKE_CXX_FLAGS="$ENV{BUILD_FLAGS}" | |
| -D Adept_ROOT=$ENV{GITHUB_WORKSPACE}/.deps/adept/install | |
| -D MFEM_DIR=$ENV{GITHUB_WORKSPACE}/.deps/mfem/build | |
| -D CMAKE_EXPORT_COMPILE_COMMANDS=ON | |
| RESULT_VARIABLE result | |
| ) | |
| if (NOT result EQUAL 0) | |
| message(FATAL_ERROR "Bad exit status") | |
| endif() | |
| - name: Run clang-tidy | |
| run: | | |
| git diff -U0 HEAD^ | clang-tidy-diff -p1 -path build/compile_commands.json -export-fixes build/fixes.yml | |
| - name: Run clang-tidy-pr-comments action | |
| uses: platisd/clang-tidy-pr-comments@master | |
| with: | |
| # The GitHub token (or a personal access token) | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # The path to the clang-tidy fixes generated previously | |
| clang_tidy_fixes: build/fixes.yml | |
| # Optionally set to true if you want the Action to request | |
| # changes in case warnings are found | |
| request_changes: true | |
| # Optionally set the number of comments per review | |
| # to avoid GitHub API timeouts for heavily loaded | |
| # pull requests | |
| suggestions_per_comment: 25 | |
| - name: ccache statistics | |
| shell: cmake -P {0} | |
| run: | | |
| file(TO_CMAKE_PATH "$ENV{GITHUB_WORKSPACE}" ccache_basedir) | |
| set(ENV{CCACHE_BASEDIR} "${ccache_basedir}") | |
| set(ENV{CCACHE_DIR} "${ccache_basedir}/.ccache") | |
| execute_process(COMMAND ccache -s) |