Regrouped headers in thermal_residual.cpp and added untracked files (…

…lib64)

lib64/cmake/miso/miso-config-version.cmake

@@ -0,0 +1,43 @@
+# This is a basic version file for the Config-mode of find_package().
+# It is used by write_basic_package_version_file() as input file for configure_file()
+# to create a version-file which can be installed along a config.cmake file.
+#
+# The created file sets PACKAGE_VERSION_EXACT if the current version string and
+# the requested version string are exactly the same and it sets
+# PACKAGE_VERSION_COMPATIBLE if the current version is >= requested version.
+# The variable CVF_VERSION must be set before calling configure_file().
+
+set(PACKAGE_VERSION "1.0")
+
+if (PACKAGE_FIND_VERSION_RANGE)
+  # Package version must be in the requested version range
+  if ((PACKAGE_FIND_VERSION_RANGE_MIN STREQUAL "INCLUDE" AND PACKAGE_VERSION VERSION_LESS PACKAGE_FIND_VERSION_MIN)
+      OR ((PACKAGE_FIND_VERSION_RANGE_MAX STREQUAL "INCLUDE" AND PACKAGE_VERSION VERSION_GREATER PACKAGE_FIND_VERSION_MAX)
+        OR (PACKAGE_FIND_VERSION_RANGE_MAX STREQUAL "EXCLUDE" AND PACKAGE_VERSION VERSION_GREATER_EQUAL PACKAGE_FIND_VERSION_MAX)))
+    set(PACKAGE_VERSION_COMPATIBLE FALSE)
+  else()
+    set(PACKAGE_VERSION_COMPATIBLE TRUE)
+  endif()
+else()
+  if(PACKAGE_VERSION VERSION_LESS PACKAGE_FIND_VERSION)
+    set(PACKAGE_VERSION_COMPATIBLE FALSE)
+  else()
+    set(PACKAGE_VERSION_COMPATIBLE TRUE)
+    if(PACKAGE_FIND_VERSION STREQUAL PACKAGE_VERSION)
+      set(PACKAGE_VERSION_EXACT TRUE)
+    endif()
+  endif()
+endif()
+
+
+# if the installed or the using project don't have CMAKE_SIZEOF_VOID_P set, ignore it:
+if("${CMAKE_SIZEOF_VOID_P}" STREQUAL "" OR "8" STREQUAL "")
+  return()
+endif()
+
+# check that the installed version has the same 32/64bit-ness as the one which is currently searching:
+if(NOT CMAKE_SIZEOF_VOID_P STREQUAL "8")
+  math(EXPR installedBits "8 * 8")
+  set(PACKAGE_VERSION "${PACKAGE_VERSION} (${installedBits}bit)")
+  set(PACKAGE_VERSION_UNSUITABLE TRUE)
+endif()

lib64/cmake/miso/miso-config.cmake

@@ -0,0 +1,34 @@
+
+####### Expanded from @PACKAGE_INIT@ by configure_package_config_file() #######
+####### Any changes to this file will be overwritten by the next CMake run ####
+####### The input file was config.cmake.in                            ########
+
+get_filename_component(PACKAGE_PREFIX_DIR "${CMAKE_CURRENT_LIST_DIR}/../../../" ABSOLUTE)
+
+macro(set_and_check _var _file)
+  set(${_var} "${_file}")
+  if(NOT EXISTS "${_file}")
+    message(FATAL_ERROR "File or directory ${_file} referenced by variable ${_var} does not exist !")
+  endif()
+endmacro()
+
+macro(check_required_components _NAME)
+  foreach(comp ${${_NAME}_FIND_COMPONENTS})
+    if(NOT ${_NAME}_${comp}_FOUND)
+      if(${_NAME}_FIND_REQUIRED_${comp})
+        set(${_NAME}_FOUND FALSE)
+      endif()
+    endif()
+  endforeach()
+endmacro()
+
+####################################################################################
+
+include("${CMAKE_CURRENT_LIST_DIR}/mach-targets.cmake")
+
+include(CMakeFindDependencyMacro)
+find_dependency(tinysplinecxx)
+find_dependency(nlohmann_json)
+find_dependency(Adept)
+
+check_required_components(mach)

lib64/cmake/miso/miso-targets-release.cmake

@@ -0,0 +1,19 @@
+#----------------------------------------------------------------
+# Generated CMake target import file for configuration "Release".
+#----------------------------------------------------------------
+
+# Commands may need to know the format version.
+set(CMAKE_IMPORT_FILE_VERSION 1)
+
+# Import target "miso::miso" for configuration "Release"
+set_property(TARGET miso::miso APPEND PROPERTY IMPORTED_CONFIGURATIONS RELEASE)
+set_target_properties(miso::miso PROPERTIES
+  IMPORTED_LINK_INTERFACE_LANGUAGES_RELEASE "CXX"
+  IMPORTED_LOCATION_RELEASE "${_IMPORT_PREFIX}/lib64/libmiso.a"
+  )
+
+list(APPEND _cmake_import_check_targets miso::miso )
+list(APPEND _cmake_import_check_files_for_miso::miso "${_IMPORT_PREFIX}/lib64/libmiso.a" )
+
+# Commands beyond this point should not need to know the version.
+set(CMAKE_IMPORT_FILE_VERSION)

lib64/cmake/miso/miso-targets.cmake

@@ -0,0 +1,126 @@
+# Generated by CMake
+
+if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" LESS 2.8)
+   message(FATAL_ERROR "CMake >= 2.8.0 required")
+endif()
+if(CMAKE_VERSION VERSION_LESS "2.8.3")
+   message(FATAL_ERROR "CMake >= 2.8.3 required")
+endif()
+cmake_policy(PUSH)
+cmake_policy(VERSION 2.8.3...3.24)
+#----------------------------------------------------------------
+# Generated CMake target import file.
+#----------------------------------------------------------------
+
+# Commands may need to know the format version.
+set(CMAKE_IMPORT_FILE_VERSION 1)
+
+# Protect against multiple inclusion, which would fail when already imported targets are added once more.
+set(_cmake_targets_defined "")
+set(_cmake_targets_not_defined "")
+set(_cmake_expected_targets "")
+foreach(_cmake_expected_target IN ITEMS miso::miso)
+  list(APPEND _cmake_expected_targets "${_cmake_expected_target}")
+  if(TARGET "${_cmake_expected_target}")
+    list(APPEND _cmake_targets_defined "${_cmake_expected_target}")
+  else()
+    list(APPEND _cmake_targets_not_defined "${_cmake_expected_target}")
+  endif()
+endforeach()
+unset(_cmake_expected_target)
+if(_cmake_targets_defined STREQUAL _cmake_expected_targets)
+  unset(_cmake_targets_defined)
+  unset(_cmake_targets_not_defined)
+  unset(_cmake_expected_targets)
+  unset(CMAKE_IMPORT_FILE_VERSION)
+  cmake_policy(POP)
+  return()
+endif()
+if(NOT _cmake_targets_defined STREQUAL "")
+  string(REPLACE ";" ", " _cmake_targets_defined_text "${_cmake_targets_defined}")
+  string(REPLACE ";" ", " _cmake_targets_not_defined_text "${_cmake_targets_not_defined}")
+  message(FATAL_ERROR "Some (but not all) targets in this export set were already defined.\nTargets Defined: ${_cmake_targets_defined_text}\nTargets not yet defined: ${_cmake_targets_not_defined_text}\n")
+endif()
+unset(_cmake_targets_defined)
+unset(_cmake_targets_not_defined)
+unset(_cmake_expected_targets)
+
+
+# Compute the installation prefix relative to this file.
+get_filename_component(_IMPORT_PREFIX "${CMAKE_CURRENT_LIST_FILE}" PATH)
+get_filename_component(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+get_filename_component(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+get_filename_component(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+if(_IMPORT_PREFIX STREQUAL "/")
+  set(_IMPORT_PREFIX "")
+endif()
+
+# Create imported target miso::miso
+add_library(miso::miso STATIC IMPORTED)
+
+set_target_properties(miso::miso PROPERTIES
+  INTERFACE_COMPILE_DEFINITIONS "MFEM_USE_EGADS"
+  INTERFACE_COMPILE_FEATURES "cxx_std_17"
+  INTERFACE_INCLUDE_DIRECTORIES "/lore/idrish/Developer/motor/mfem/build;/opt/scorec/spack/rhel9/v0201_4/install/linux-rhel9-x86_64/gcc-12.3.0/hypre-2.28.0-dljbagffd2rfhfkwt74jbi3q66maayyo/include;/opt/scorec/spack/rhel9/v0201_4/install/linux-rhel9-x86_64/gcc-12.3.0/metis-5.1.0-65szzoyrtgauis34eop3w5zu6v6uarer/include;/lore/idrish/Developer/motor/core/build/install/include;/lore/idrish/Developer/motor/core/build/install/include;${_IMPORT_PREFIX}/include"
+  INTERFACE_LINK_LIBRARIES "Adept::adept;mfem;nlohmann_json::nlohmann_json;\$<LINK_ONLY:tinysplinecxx::tinysplinecxx>"
+  INTERFACE_SOURCES "/lore/idrish/Developer/motor/test_MISO/src/utils/div_free_projector.cpp;/lore/idrish/Developer/motor/test_MISO/src/utils/irrotational_projector.cpp;/lore/idrish/Developer/motor/test_MISO/src/utils/l2_transfer_operator.cpp;/lore/idrish/Developer/motor/test_MISO/src/utils/utils.cpp;/lore/idrish/Developer/motor/test_MISO/src/utils/div_free_projector.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/irrotational_projector.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/kdtree.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/miso_types.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/l2_transfer_operator.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/utilities.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/utils.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/mesh_warper/mesh_move_integ.cpp;/lore/idrish/Developer/motor/test_MISO/src/utils/mesh_warper/mesh_warper.cpp;/lore/idrish/Developer/motor/test_MISO/src/utils/mesh_warper/mesh_move_integ.hpp;/lore/idrish/Developer/motor/test_MISO/src/utils/mesh_warper/mesh_warper.hpp"
+)
+
+if(CMAKE_VERSION VERSION_LESS 3.1.0)
+  message(FATAL_ERROR "This file relies on consumers using CMake 3.1.0 or greater.")
+endif()
+
+# Load information for each installed configuration.
+file(GLOB _cmake_config_files "${CMAKE_CURRENT_LIST_DIR}/miso-targets-*.cmake")
+foreach(_cmake_config_file IN LISTS _cmake_config_files)
+  include("${_cmake_config_file}")
+endforeach()
+unset(_cmake_config_file)
+unset(_cmake_config_files)
+
+# Cleanup temporary variables.
+set(_IMPORT_PREFIX)
+
+# Loop over all imported files and verify that they actually exist
+foreach(_cmake_target IN LISTS _cmake_import_check_targets)
+  foreach(_cmake_file IN LISTS "_cmake_import_check_files_for_${_cmake_target}")
+    if(NOT EXISTS "${_cmake_file}")
+      message(FATAL_ERROR "The imported target \"${_cmake_target}\" references the file
+   \"${_cmake_file}\"
+but this file does not exist.  Possible reasons include:
+* The file was deleted, renamed, or moved to another location.
+* An install or uninstall procedure did not complete successfully.
+* The installation package was faulty and contained
+   \"${CMAKE_CURRENT_LIST_FILE}\"
+but not all the files it references.
+")
+    endif()
+  endforeach()
+  unset(_cmake_file)
+  unset("_cmake_import_check_files_for_${_cmake_target}")
+endforeach()
+unset(_cmake_target)
+unset(_cmake_import_check_targets)
+
+# Make sure the targets which have been exported in some other
+# export set exist.
+unset(${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets)
+foreach(_target "nlohmann_json::nlohmann_json" "tinysplinecxx::tinysplinecxx" )
+  if(NOT TARGET "${_target}" )
+    set(${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets "${${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets} ${_target}")
+  endif()
+endforeach()
+
+if(DEFINED ${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets)
+  if(CMAKE_FIND_PACKAGE_NAME)
+    set( ${CMAKE_FIND_PACKAGE_NAME}_FOUND FALSE)
+    set( ${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE "The following imported targets are referenced, but are missing: ${${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets}")
+  else()
+    message(FATAL_ERROR "The following imported targets are referenced, but are missing: ${${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets}")
+  endif()
+endif()
+unset(${CMAKE_FIND_PACKAGE_NAME}_NOT_FOUND_MESSAGE_targets)
+
+# Commands beyond this point should not need to know the version.
+set(CMAKE_IMPORT_FILE_VERSION)
+cmake_policy(POP)

lib64/cmake/nlohmann_json/nlohmann_jsonConfig.cmake

@@ -0,0 +1,15 @@
+include(FindPackageHandleStandardArgs)
+set(${CMAKE_FIND_PACKAGE_NAME}_CONFIG ${CMAKE_CURRENT_LIST_FILE})
+find_package_handle_standard_args(nlohmann_json CONFIG_MODE)
+
+if(NOT TARGET nlohmann_json::nlohmann_json)
+    include("${CMAKE_CURRENT_LIST_DIR}/nlohmann_jsonTargets.cmake")
+    if((NOT TARGET nlohmann_json) AND
+       (NOT nlohmann_json_FIND_VERSION OR
+        nlohmann_json_FIND_VERSION VERSION_LESS 3.2.0))
+        add_library(nlohmann_json INTERFACE IMPORTED)
+        set_target_properties(nlohmann_json PROPERTIES
+            INTERFACE_LINK_LIBRARIES nlohmann_json::nlohmann_json
+        )
+    endif()
+endif()

lib64/cmake/nlohmann_json/nlohmann_jsonConfigVersion.cmake

@@ -0,0 +1,20 @@
+# This is essentially cmake's BasicConfigVersion-SameMajorVersion.cmake.in but
+# without the 32/64-bit check.  Since json is a header-only library, it doesn't
+# matter if it was built on a different platform than what it is used on (see
+# https://github.com/nlohmann/json/issues/1697).
+set(PACKAGE_VERSION "3.10.5")
+
+if(PACKAGE_VERSION VERSION_LESS PACKAGE_FIND_VERSION)
+  set(PACKAGE_VERSION_COMPATIBLE FALSE)
+else()
+
+  if(PACKAGE_FIND_VERSION_MAJOR STREQUAL "3")
+    set(PACKAGE_VERSION_COMPATIBLE TRUE)
+  else()
+    set(PACKAGE_VERSION_COMPATIBLE FALSE)
+  endif()
+
+  if(PACKAGE_FIND_VERSION STREQUAL PACKAGE_VERSION)
+      set(PACKAGE_VERSION_EXACT TRUE)
+  endif()
+endif()

lib64/cmake/nlohmann_json/nlohmann_jsonTargets.cmake

@@ -0,0 +1,108 @@
+# Generated by CMake
+
+if("${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION}" LESS 2.8)
+   message(FATAL_ERROR "CMake >= 2.8.0 required")
+endif()
+if(CMAKE_VERSION VERSION_LESS "2.8.3")
+   message(FATAL_ERROR "CMake >= 2.8.3 required")
+endif()
+cmake_policy(PUSH)
+cmake_policy(VERSION 2.8.3...3.24)
+#----------------------------------------------------------------
+# Generated CMake target import file.
+#----------------------------------------------------------------
+
+# Commands may need to know the format version.
+set(CMAKE_IMPORT_FILE_VERSION 1)
+
+# Protect against multiple inclusion, which would fail when already imported targets are added once more.
+set(_cmake_targets_defined "")
+set(_cmake_targets_not_defined "")
+set(_cmake_expected_targets "")
+foreach(_cmake_expected_target IN ITEMS nlohmann_json::nlohmann_json)
+  list(APPEND _cmake_expected_targets "${_cmake_expected_target}")
+  if(TARGET "${_cmake_expected_target}")
+    list(APPEND _cmake_targets_defined "${_cmake_expected_target}")
+  else()
+    list(APPEND _cmake_targets_not_defined "${_cmake_expected_target}")
+  endif()
+endforeach()
+unset(_cmake_expected_target)
+if(_cmake_targets_defined STREQUAL _cmake_expected_targets)
+  unset(_cmake_targets_defined)
+  unset(_cmake_targets_not_defined)
+  unset(_cmake_expected_targets)
+  unset(CMAKE_IMPORT_FILE_VERSION)
+  cmake_policy(POP)
+  return()
+endif()
+if(NOT _cmake_targets_defined STREQUAL "")
+  string(REPLACE ";" ", " _cmake_targets_defined_text "${_cmake_targets_defined}")
+  string(REPLACE ";" ", " _cmake_targets_not_defined_text "${_cmake_targets_not_defined}")
+  message(FATAL_ERROR "Some (but not all) targets in this export set were already defined.\nTargets Defined: ${_cmake_targets_defined_text}\nTargets not yet defined: ${_cmake_targets_not_defined_text}\n")
+endif()
+unset(_cmake_targets_defined)
+unset(_cmake_targets_not_defined)
+unset(_cmake_expected_targets)
+
+
+# Compute the installation prefix relative to this file.
+get_filename_component(_IMPORT_PREFIX "${CMAKE_CURRENT_LIST_FILE}" PATH)
+get_filename_component(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+get_filename_component(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+get_filename_component(_IMPORT_PREFIX "${_IMPORT_PREFIX}" PATH)
+if(_IMPORT_PREFIX STREQUAL "/")
+  set(_IMPORT_PREFIX "")
+endif()
+
+# Create imported target nlohmann_json::nlohmann_json
+add_library(nlohmann_json::nlohmann_json INTERFACE IMPORTED)
+
+set_target_properties(nlohmann_json::nlohmann_json PROPERTIES
+  INTERFACE_COMPILE_DEFINITIONS "JSON_USE_IMPLICIT_CONVERSIONS=\$<BOOL:ON>;JSON_DIAGNOSTICS=\$<BOOL:OFF>"
+  INTERFACE_COMPILE_FEATURES "cxx_std_11"
+  INTERFACE_INCLUDE_DIRECTORIES "${_IMPORT_PREFIX}/include;${_IMPORT_PREFIX}/include"
+)
+
+if(CMAKE_VERSION VERSION_LESS 3.0.0)
+  message(FATAL_ERROR "This file relies on consumers using CMake 3.0.0 or greater.")
+endif()
+
+# Load information for each installed configuration.
+file(GLOB _cmake_config_files "${CMAKE_CURRENT_LIST_DIR}/nlohmann_jsonTargets-*.cmake")
+foreach(_cmake_config_file IN LISTS _cmake_config_files)
+  include("${_cmake_config_file}")
+endforeach()
+unset(_cmake_config_file)
+unset(_cmake_config_files)
+
+# Cleanup temporary variables.
+set(_IMPORT_PREFIX)
+
+# Loop over all imported files and verify that they actually exist
+foreach(_cmake_target IN LISTS _cmake_import_check_targets)
+  foreach(_cmake_file IN LISTS "_cmake_import_check_files_for_${_cmake_target}")
+    if(NOT EXISTS "${_cmake_file}")
+      message(FATAL_ERROR "The imported target \"${_cmake_target}\" references the file
+   \"${_cmake_file}\"
+but this file does not exist.  Possible reasons include:
+* The file was deleted, renamed, or moved to another location.
+* An install or uninstall procedure did not complete successfully.
+* The installation package was faulty and contained
+   \"${CMAKE_CURRENT_LIST_FILE}\"
+but not all the files it references.
+")
+    endif()
+  endforeach()
+  unset(_cmake_file)
+  unset("_cmake_import_check_files_for_${_cmake_target}")
+endforeach()
+unset(_cmake_target)
+unset(_cmake_import_check_targets)
+
+# This file does not depend on other imported targets which have
+# been exported from the same project but in a separate export set.
+
+# Commands beyond this point should not need to know the version.
+set(CMAKE_IMPORT_FILE_VERSION)
+cmake_policy(POP)