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Probabilistic Models in Biology

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  1. scLVM scLVM Public

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

    HTML 104 46

  2. peer peer Public

    Forked from mz2/peer

    A factor analysis package

    C++ 95 38

  3. limix-backup limix-backup Public

    C++ 45 12

  4. pygp pygp Public

    A Gaussian process toolbox in python

    Python 42 9

  5. deepcpg deepcpg Public

    Forked from cangermueller/deepcpg

    Deep neural networks for predicting CpG methylation

    Python 37 11

  6. deeprvat deeprvat Public

    Python 35 5

Repositories

Showing 10 of 52 repositories
  • deeprvat Public
    PMBio/deeprvat’s past year of commit activity
    Python 35 5 2 3 Updated Nov 22, 2024
  • spatialdata-workshops Public
    PMBio/spatialdata-workshops’s past year of commit activity
    Jupyter Notebook 11 BSD-3-Clause 4 5 1 Updated Oct 22, 2024
  • MB_scSeq Public

    This repo contains scripts for the analysis of scDNA- and scSeq data from LFS medulloblastoma accompanying the manuscript "SINGLE CELL MULTI-OMICS ANALYSIS OF CHROMOTHRIPTIC MEDULLOBLASTOMA HIGHLIGHTS GENOMIC AND TRANSCRIPTOMIC CONSEQUENCES OF GENOME INSTABILITY".

    PMBio/MB_scSeq’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Oct 11, 2024
  • pypi-download-stats Public

    Notebooks to plot download stats for PyPI packages

    PMBio/pypi-download-stats’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 26, 2024
  • spaceTree Public
    PMBio/spaceTree’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 16, 2024
  • deeprvat-analysis Public
    PMBio/deeprvat-analysis’s past year of commit activity
    Python 3 0 0 0 Updated Jul 18, 2024
  • bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    PMBio/bicycle’s past year of commit activity
    Jupyter Notebook 30 3 1 1 Updated Jul 17, 2024
  • MetH5Format Public

    HDF5-based container format for Methylation calls from long reads

    PMBio/MetH5Format’s past year of commit activity
    Python 7 MIT 2 3 0 Updated Jan 24, 2024
  • MuDataSeurat Public

    .h5mu files interface for Seurat

    PMBio/MuDataSeurat’s past year of commit activity
    R 26 11 5 1 Updated Nov 28, 2023
  • ase_spermatogenesis Public
    PMBio/ase_spermatogenesis’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 17, 2023
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