Fix CMake scripts and partial support for shapely2 #42
Workflow file for this run
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| name: DeNSE CI | |
| env: | |
| DO_PLOT: 0 | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| include: | |
| - os: ubuntu-latest | |
| path: ~/.cache/pip | |
| python: python3 | |
| pip: pip3 | |
| - os: macos-latest | |
| path: ~/Library/Caches/pip | |
| python: python3 | |
| pip: pip3 | |
| - os: windows-latest | |
| path: ~\AppData\Local\pip\Cache | |
| python: python | |
| pip: pip | |
| steps: | |
| - name: Checkout repo content | |
| uses: actions/checkout@master | |
| with: | |
| submodules: recursive | |
| - name: Cache Homebrew | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/Library/Caches/Homebrew | |
| key: homebrew-cache | |
| restore-keys: | | |
| homebrew-cache | |
| - name: Cache pip | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ matrix.path }} | |
| key: ${{ matrix.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ matrix.os }}-pip- | |
| - name: Activate Conda Windows | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| uses: s-weigand/setup-conda@v1 | |
| - name: Build Ubuntu | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| chmod +x extra/install_debian.sh | |
| cd extra | |
| ./install_debian.sh | |
| - name: Build MacOS | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| run: | | |
| rm -rf /usr/local/bin/2to3 | |
| brew unlink gcc gcc@10 || true | |
| chmod +x extra/install_macos.sh | |
| cd extra | |
| ./install_macos.sh | |
| - name: Build Windows | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| run: | | |
| conda install python cmake geos boost | |
| pip install "cython<3" | |
| pip install scipy numpy matplotlib pytest shapely pint PyOpenGL svg.path dxfgrabber networkx pyneuroml | |
| pip install nngt | |
| cd extra | |
| ./install_windows.cmd | |
| - name: Test | |
| run: | | |
| ${{ matrix.pip }} install pytest | |
| ${{ matrix.python }} -m pytest tests --ignore=tests/todo |