PyNeurActiv

Python module on neuronal activity: analysis tools and theoretical models.

Installation

This Python package requires:

• a working installation of Python >= 2.7
• numpy
• scipy
• matplotlib

Recommended additional packages are:

• nngt for some functionalities
• pandas for raster analysis

Open a terminal in the folder of your choice, then type

git clone https://github.com/SENeC-Initiative/PyNeurActiv.git
cd PyNeurActiv
export PYTHONPATH=$(pwd):$PYTHONPATH

otherwise you can also install it globally with pip

git clone https://github.com/SENeC-Initiative/PyNeurActiv.git
cd PyNeurActiv
sudo pip install -e .

The above commands will temporarily set your $PYTHONPATH. Add the appropriate path in your .bashrc to set the package permanently.

Package can then be imported in python using import PyNeurActiv or for short import PyNeurActiv as pna.