Skip to content

v0.3.1

Compare
Choose a tag to compare
@sandeepkunkunuru sandeepkunkunuru released this 28 Jan 01:33
· 61 commits to main since this release
  • Adding links between trials and interventions in addition to trials and conditions.
  • conditions and interventions are fetched from database (instead of files). Corresponding edges b/w trials and conditions, trials and interventions are added to RDF. For example :
  <https://clinicaltrials.gov/ct2/show/NCT00093782> <Condition> <http://id.nlm.nih.gov/mesh/2022/T000687> .
  <https://clinicaltrials.gov/ct2/show/NCT00093782> <Intervention> <http://id.nlm.nih.gov/mesh/2022/T538652> .
  • All global trial's - 755450 - are added to RDF. For example :
<https://clinicaltrials.gov/ct2/show/NCT00172328> <TrialId> "NCT00172328" .
 <https://www.who.int/clinical-trials-registry-platform/CTRI/2021/05/033487> <TrialId> "CTRI/2021/05/033487" .
  • Starting with a fresh model for final RDF instead of MeSH RDF. MeSH ids that are not linked to any trial are not considered. This reduces the graph size considerably.
  • Trial records are fetched from ICTRP's weekly + periodic full export and AACT's daily + monthly full snapshot.
  • Trials are written down to a file (will be used later) : vaidhyamegha_clinical_trials.csv.gz
  $ cat data/open_knowledge_graph_on_clinical_trials/vaidhyamegha_clinical_trials.csv | sort -u | wc -l
755450
  • Download the RDF : vaidhyamegha_open_kg_clinical_trials_v0.3.nt.gz