This repo is the home for MCSB bootcamp dry! It's organized into folders for the different modules.
- Install Git & other command line tools, Atom, Matlab. Instructions are in Day 1 folder.
- Make a GitHub account if you don't already have one
We'll ask you to install more stuff as well, but hold on until InstallFest at the end of day 1 for that.
A rough outline of the schedule is:
| Day | Time | Project | Instructor | TA |
|---|---|---|---|---|
| Monday (Day 1) | AM | Introduction | Jun Allard | |
| AM | Project management and collaborative coding with git | Matt B | Yanwen, Honglei | |
| PM | Coding Basics | Lara | Honglei | |
| PM | InstallFest | |||
| Tuesday (Day 2) | AM | Mechanistic Models | Matt B | Katie K |
| PM | Fitting models to data | Matt B | Tessa | |
| Wednesday (Day 3) | AM | Classical Mathematical Biology | Lara | Trini, Jun |
| PM | Classical Mathematical Biology | Lara | Emmanuel | |
| Thursday (Zoo Part 1) | AM | Single-cell metadata visualization & R | Kerrigan | Nick |
| AM | Rapid code evaluation & C | Jun Allard | ||
| PM | Symbolic math and dynamic visualization with Mathematica | Arthur Lander | Yingxin | |
| PM | Complex document preparation & Latex | Tessa | ||
| Friday (Zoo Part 2) | AM | Files and strings with Python and Jupyter | Srikiran | Shiji |
| AM | High-performance computing & Bash tools | Kerrigan | ||
| PM | Scientific visualization & Blender | Abdon | Katie L |
Check here to match names to faces!
Here are some things you might want in the future
Available free to students:
- Matlab
- Mathematica
- Labview
- Solidworks
- Microsoft office
- Windows 10
- Unlimited storage on Google drive through your UCI Google account
- Time on the high performance cluster (HPC)
There's more too. Lists:
- https://uci.service-now.com/sp?id=sc_category&sys_id=7987752cdb67a700712f389f9d961995
- http://laptops.eng.uci.edu/software-installation
- BU bioinformatics: https://foundations-in-computational-skills.readthedocs.io/en/latest/