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32 Open 147 Closed
32 Open 147 Closed
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Issues list

Metagenomic mode Help with read_analysis.py
#240 opened Nov 21, 2024 by florenmartino
1
Feature Request: Checking Input-files enhancement
#239 opened Nov 20, 2024 by SimonHegele
1
Transcript ID in reference and expression profile do not match bug
#237 opened Oct 30, 2024 by SimonHegele
8
How many threads and memories required at training stage?
#236 opened Oct 20, 2024 by yaoxkkkkk
1
head_vs_ht_ratio = head_vs_ht_ratio_list[each_read] IndexError: list index out of range
#228 opened Sep 29, 2024 by huangxin0221
4
KeyError: "tag 'MD' not present"
#225 opened Sep 25, 2024 by mochew
5
How to simulate amplicon-seq data?
#221 opened Sep 8, 2024 by capoony
gzip intermediate fastq files feature request
#211 opened Jul 12, 2024 by nicolo-tellini
Stuck at the simulation step bug
#210 opened Jul 10, 2024 by HLHsieh
5
Failure in using Nanosim for transcriptome (ValueError: file does not contain alignment data)
#208 opened May 6, 2024 by aerusakovich
Questions about the usage and processing of the expression profile feature request
#207 opened Apr 18, 2024 by joyceFunk123
1
IndexError: list index out of range bug question
#202 opened Feb 16, 2024 by weishwu
4
Options / suggestions for how to simulate nCats data? feature request
#200 opened Nov 29, 2023 by tfenne
1
Models for newer versions of Guppy with sup basecalls feature request
#198 opened Oct 6, 2023 by hasindu2008
7
Stuck at simulation stage bug
#193 opened May 31, 2023 by kainth-amoldeep
4
ValueError: Found array with 0 sample(s) (shape=(0, 1)) while a minimum of 1 is required.
#190 opened May 16, 2023 by Dr-bioinfo
6
Option to specify desired read coverage or sequencing depth feature request question
#188 opened Mar 31, 2023 by HLHsieh
2
Infinite loop in function extract_reads in metagenome mode when length equals max length bug enhancement
#185 opened Feb 24, 2023 by danpal96
2
Nanosim hangs in the middle bug help wanted question
#184 opened Feb 17, 2023 by aastha-batta
18
Can NanoSim be applied to simulate single cell Nanopore reads enhancement feature request
#180 opened Jan 10, 2023 by yuntianf
1
Reads come mostly from one chromosome only help wanted question
#178 opened Dec 19, 2022 by dariober
1
Unexpected phred quality scores with perfect reads bug
#173 opened Oct 27, 2022 by lcoombe
Project dependencies may have API risk issues
#172 opened Oct 27, 2022 by PyDeps
Index out of range errors help wanted question
#166 opened Apr 21, 2022 by RagnarGrootKoerkamp
2
Multithreading bug when using log-normal sampling help wanted question
#164 opened Apr 18, 2022 by 2tony2
3
ProTip! Exclude everything labeled bug with -label:bug.