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47 Open 38 Closed
47 Open 38 Closed
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Issues list

Cleanup CARRIED_PREP_COLUMNS
#263 opened Dec 10, 2024 by charles-cowart
2+ projects in sample-sheets cannot share the same qiita-id
#258 opened Dec 5, 2024 by charles-cowart
@charles-cowart
Replace seqpro binaries
#257 opened Dec 5, 2024 by charles-cowart
Ensure NPH_calc_df_SLURRY.ipynb always pulls the latest abs_quant_sample_info_calc.yml from github
#247 opened Nov 7, 2024 by AmandaBirmingham
add support for pooling file generation from multiple library plates enhancement New feature or request
#242 opened Oct 9, 2024 by RodolfoSalido
@RodolfoSalido
2
Catch spaces in project name/abbreviation
#240 opened Oct 7, 2024 by cbrenchy
5
sample-sheets w/positive controls are fully descriptive
#238 opened Sep 23, 2024 by charles-cowart
2
Possibly Merge v101 and v102 spreadsheets
#237 opened Aug 31, 2024 by charles-cowart
Refactor use of strict parameter on sample_sheet.make_sample_sheet()
#236 opened Aug 30, 2024 by AmandaBirmingham
1
Newer sample-sheet types may not need a remapper.
#235 opened Aug 30, 2024 by charles-cowart
Centralize constants defining sequencers
#234 opened Aug 30, 2024 by AmandaBirmingham
Refactor sections property of KLSampleSheet to reduce confusion with _sections property of parent class
#233 opened Aug 30, 2024 by AmandaBirmingham
2
merge_read_counts() function should have a robust regex expression for matching sample_names to filenames.
#222 opened Jul 30, 2024 by RodolfoSalido
Consider refactoring KLSampleSheet class to use ABC module
#221 opened Jul 29, 2024 by charles-cowart
@charles-cowart
Improve logging support for metapool
#220 opened Jul 29, 2024 by charles-cowart
@charles-cowart
Python 3.11 doesn't support nose tests used in this repo.
#217 opened Jul 23, 2024 by charles-cowart
Validate against duplicate sample-info-file columns
#208 opened Jun 18, 2024 by charles-cowart
@charles-cowart
1
replicate [Data] columns reimplemented like Katharoseq
#206 opened May 23, 2024 by charles-cowart
@charles-cowart
update seqpro
#204 opened May 8, 2024 by charles-cowart
@charles-cowart
[Bioinformatics] section validation
#203 opened May 8, 2024 by charles-cowart
@charles-cowart
1
update examples to current katharo naming scheme.
#197 opened Apr 17, 2024 by charles-cowart
@charles-cowart
Add support for an optional file containing sequence counts.
#195 opened Apr 16, 2024 by charles-cowart
@charles-cowart
remove manual creation of sample-sheet objects
#194 opened Apr 15, 2024 by charles-cowart
@charles-cowart
3
overlapping BLANK naming when dealing with multiple projects
#190 opened Mar 21, 2024 by cbrenchy
1
validate_plate_df function should allow for arguments specifying sample_name column in metadata
#189 opened Mar 19, 2024 by maddyambre
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