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Add Cuttlebase cuttlefish atlas #338

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Add Cuttlebase cuttlefish atlas #338

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45834a1
Make empty cuttlefish.py file
kjungwoo5 Aug 2, 2024
2ace3d2
Download cuttlefish hierarchy file from github and amend format
kjungwoo5 Aug 8, 2024
1edcf82
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 8, 2024
4f16ca5
Tweaked region ID structure, loaded in region colour map from cuttlebase
kjungwoo5 Aug 10, 2024
947d056
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Aug 10, 2024
e440e5b
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 10, 2024
09ed09f
Applied RGB triplets and fixed acronyms for all regions
kjungwoo5 Aug 26, 2024
93dcd64
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Aug 29, 2024
6d5244d
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 29, 2024
74d47c1
Revised hierarchy creation using annotation data, and added both left…
kjungwoo5 Sep 15, 2024
57d7f5b
Fixed structure ID path of all regions using the new IDs found from a…
kjungwoo5 Sep 29, 2024
ab5256d
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Sep 29, 2024
ede9d78
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 29, 2024
b42a409
add wrapup function + minor tweaks
alessandrofelder Oct 4, 2024
6dd72b9
draft mesh creation
alessandrofelder Oct 4, 2024
0bae2f6
Added validation script to brainglobe main folder.
kjungwoo5 Oct 21, 2024
f2b7d02
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 21, 2024
ce5fecd
Updated mesh generation code to store meshes by correct ID. (In previ…
kjungwoo5 Nov 26, 2024
411fe4d
Scaled, rotated and inverted mesh to match the size of the annotation…
kjungwoo5 Dec 2, 2024
a8c23aa
Corrected meshes_dict in wrapup function, changed mesh generation to …
kjungwoo5 Dec 4, 2024
934d156
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Dec 4, 2024
6c45b7c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 4, 2024
98b3b3a
Edited validation script
kjungwoo5 Dec 5, 2024
407c874
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Dec 5, 2024
bbf96d4
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 5, 2024
84f9d47
Corrected the orientation of the meshes using map_points_to rather th…
kjungwoo5 Dec 8, 2024
80f188e
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Dec 8, 2024
ee46a9c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 8, 2024
f215042
Edited the atlas generation to be in 50um resolution, and changed sca…
kjungwoo5 Dec 9, 2024
82195e5
Merge branch 'cuttlefish-atlas' of https://github.com/kjungwoo5/brain…
kjungwoo5 Dec 9, 2024
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