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Perens stereotaxic mri #370

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Perens stereotaxic mri #370

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a5073e7
add perens mri
PolarBean Aug 23, 2024
426e033
update requirement for perens_mri
PolarBean Aug 23, 2024
5866489
remove hardcoded path
PolarBean Aug 23, 2024
7f1d9eb
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 23, 2024
d479291
fix formatting to pass checks
PolarBean Aug 23, 2024
2128e25
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 23, 2024
d8215ed
fix linting issue
PolarBean Aug 23, 2024
5c5f886
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 23, 2024
af31484
Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_ster…
PolarBean Aug 27, 2024
592e255
Merge branch 'brainglobe:main' into perens_stereotaxic_mri
PolarBean Aug 28, 2024
c284faf
Merge branch 'brainglobe:main' into perens_stereotaxic_mri
PolarBean Aug 28, 2024
705b4f7
remove sitk in favour of brainglobe utils
PolarBean Aug 28, 2024
fac995d
move download and extraction logic into a seperate function
PolarBean Aug 28, 2024
71b9f51
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 28, 2024
dff50a7
replace functions that could instead use bg atlas functionality
PolarBean Aug 28, 2024
112a4b9
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Aug 28, 2024
f129f23
Add stereotaxic atlas to readme
PolarBean Aug 29, 2024
fead940
Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_ster…
PolarBean Aug 29, 2024
0efb276
Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_ster…
PolarBean Aug 29, 2024
b05021f
update to follow new template
PolarBean Sep 11, 2024
dbe44f1
removed weird nested function
PolarBean Sep 11, 2024
4b8e085
change template to reference for consistency
PolarBean Sep 11, 2024
f568d65
update URL to new version, gubra updated this to fix label issue in lsfm
PolarBean Sep 12, 2024
1fd2290
add progress bar
PolarBean Sep 12, 2024
178d92e
add more print statements so progress is easier to observe
PolarBean Sep 12, 2024
239af9a
added correct orientation
PolarBean Sep 15, 2024
ecc4f40
Merge branch 'brainglobe:main' into perens_stereotaxic_mri
PolarBean Sep 27, 2024
1250a59
added print statement to structure information function
PolarBean Sep 27, 2024
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