v1.3.1

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #61
• update minimum cellfinder and segmentation by @alessandrofelder in #62

Full Changelog: v1.3.0...v1.3.1

v1.3.0

What's Changed

First release of the metapackage with the new brainmapper napari widget.

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #57
• Standardise contact information in readme by @adamltyson in #58
• Update pinned dependencies and add brainglobe-napari by @adamltyson in #60

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

First release of the meta-package to support pytorch as the default classification backend.

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #55
• Update dependencies & supported Python versions by @adamltyson in #56

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #50
• add codecov token by @K-Meech in #51
• run CI on both types of Mac by @alessandrofelder in #52
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #53
• pin dependencies to latest releases by @alessandrofelder in #54

New Contributors

• @alessandrofelder made their first contribution in #52

Full Changelog: v1.0.4...v1.1.0

v1.0.4

Refactor LoadFileException from brainreg into brainglobe-utils

LoadFileException from brainreg has been combined with ImageIOLoadException from brainglobe_utils.image_io. This release updates the versions of both brainreg and brainglobe-utils to ensure they remain compatible with each other.

What's Changed

• Update brainglobe-utils and brainreg versions by @K-Meech in #49

New Contributors

• @K-Meech made their first contribution in #49

Full Changelog: v1.0.3...v1.0.4

v1.0.3

brainglobe-atlasapi release

bg-atlasapi has been renamed to brainglobe-atlasapi to keep it in line with the naming convention for BrainGlobe tools.
This update ensures that all installed BrainGlobe tools point to the new package, and removes the old bg-atlasapi package.
See the blog post for more information.

Also in this update:

• cellfinder version is bumped to 1.1.1, fixing a bug that could cause hanging and silent crashes when working with large numbers (>2**16 - 1) cell candidates.

What's Changed

• brainglobe-atlasapi rename update by @willGraham01 in #48

Full Changelog: v1.0.2...v1.0.3

v1.0.2

imio retirement

imio hqw now been absorbed into brainglobe-utils.
This release provides a stable release of all BrainGlobe tools with this dependency change resolved.
See the blog post for more information.

What's Changed

• brainglobe-space update by @willGraham01 in #42
• Add CITATION file by @willGraham01 in #44
• Update test_and_deploy.yml by @IgorTatarnikov in #45
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #46
• Update brainglobe-utils dependency and remove imio by @willGraham01 in #47

New Contributors

• @IgorTatarnikov made their first contribution in #45

Full Changelog: v1.0.0...v1.0.2

v1.0.0

BrainGlobe Version 1 is here!

Our blog post has all the details, as there's a lot to encapsulate here!

But the TL;DR...

All BrainGlobe tools, all in one place, all in one install.

pip install brainglobe into a clean envrionment running Python 3.9 or 3.10.

• No more need for individual tool installation
• Assured consistency and inter-operability between all provided tools
• For future updates to tools, use pip install brainglobe --update 🥳

What's Changed

• [Feature] Version 1 release! 🥳 by @willGraham01 in #38

Full Changelog: v0.4.0...v1.0.0

v0.4.0

Update shipped packages

This is a stepping stone towards the full BrainGlobe version 1 release, adding some additional packages that are not part of the internal restructuring but are nonetheless ready for release.

• Now shipping brainrender
• Now shipping brainrender-napari
• No longer shipping morphapi

See #37 for full details and links to the corresponding tools.

What's Changed

• Update packages that are shipped by @willGraham01 in #37

Full Changelog: v0.3.1...v0.4.0

v0.3.1

Metadata update

Small update to point users to the BrainGlobe website if they're looking for documentation, or the source code if they explicitly want that when viewing the package on PyPI.

What's Changed

• Update pyproject.toml by @adamltyson in #33

Full Changelog: v0.3.0...v0.3.1