Save output with the same format as brainreg
#252
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| tags: | |
| - '*' | |
| pull_request: | |
| schedule: | |
| # Runs at 6:10am UTC on Monday | |
| - cron: '10 6 * * 1' | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/lint@v2 | |
| manifest: | |
| name: Check Manifest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/check_manifest@v2 | |
| test: | |
| needs: [linting, manifest] | |
| name: ${{ matrix.os }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Run all supported Python versions on linux | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest] | |
| # Include one windows two macos runs (intel and arm based) | |
| include: | |
| - os: macos-13 # Intel Mac | |
| python-version: "3.12" | |
| - os: macos-latest # ARM Mac | |
| python-version: "3.12" | |
| - os: windows-latest | |
| python-version: "3.12" | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # these libraries enable testing on Qt on linux | |
| - uses: pyvista/setup-headless-display-action@v2 | |
| with: | |
| qt: true | |
| # cache atlases needed by the tests | |
| - name: Cache Atlases | |
| id: atlas-cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: | # ensure we don't cache any interrupted atlas download and extraction! | |
| ~/.brainglobe/* | |
| !~/.brainglobe/atlas.tar.gz | |
| key: ${{ runner.os }}-cached-atlases | |
| enableCrossOsArchive: false # ~ and $HOME evaluate to different places across OSs! | |
| - if: ${{ steps.atlas-cache.outputs.cache-hit == 'true' }} | |
| name: List files in brainglobe data folder # good to be able to sanity check that user data is as expected | |
| run: | | |
| ls -af ~/.brainglobe/ | |
| # Run tests | |
| - uses: neuroinformatics-unit/actions/test@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| secret-codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Notify slack on scheduled failure | |
| if: failure() && github.event_name == 'schedule' | |
| uses: ravsamhq/notify-slack-action@v2 | |
| with: | |
| status: ${{ job.status }} # required | |
| notify_when: 'failure' | |
| env: | |
| SLACK_WEBHOOK_URL: ${{ secrets.SLACK_NOTIFYBOT_WEBHOOK_URL }} # required | |
| build_sdist_wheels: | |
| name: Build source distribution | |
| needs: [test] | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 | |
| upload_all: | |
| name: Publish build distributions | |
| needs: [build_sdist_wheels] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/upload_pypi@v2 | |
| with: | |
| secret-pypi-key: ${{ secrets.TWINE_API_KEY }} |