Another source code pass

brainglobe · Nov 1, 2023 · 797744c · 797744c
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commit 797744c
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Showing 5 changed files with 28 additions and 22 deletions.
diff --git a/brainglobe_segmentation/regions/analysis.py b/brainglobe_segmentation/regions/analysis.py
@@ -5,7 +5,7 @@
 from napari.qt.threading import thread_worker
 from skimage.measure import regionprops_table
 
-from brainreg_segment.atlas.utils import lateralise_atlas_image
+from brainglobe_segmentation.atlas.utils import lateralise_atlas_image
 
 
 @thread_worker

diff --git a/brainglobe_segmentation/segment.py b/brainglobe_segmentation/segment.py
@@ -8,11 +8,11 @@
 from qtpy import QtCore
 from qtpy.QtWidgets import QFileDialog, QGridLayout, QGroupBox, QLabel, QWidget
 
-from brainreg_segment.atlas.utils import (
+from brainglobe_segmentation.atlas.utils import (
     get_available_atlases,
     structure_from_viewer,
 )
-from brainreg_segment.layout.gui_constants import (
+from brainglobe_segmentation.layout.gui_constants import (
     BOUNDARIES_STRING,
     COLUMN_WIDTH,
     DISPLAY_REGION_INFO,
@@ -23,15 +23,21 @@
     WINDOW_HEIGHT,
     WINDOW_WIDTH,
 )
-from brainreg_segment.layout.gui_elements import add_button, add_combobox
-from brainreg_segment.layout.utils import display_warning
-from brainreg_segment.paths import Paths
-from brainreg_segment.regions.IO import export_label_layers, save_label_layers
+from brainglobe_segmentation.layout.gui_elements import (
+    add_button,
+    add_combobox,
+)
+from brainglobe_segmentation.layout.utils import display_warning
+from brainglobe_segmentation.paths import Paths
+from brainglobe_segmentation.regions.IO import (
+    export_label_layers,
+    save_label_layers,
+)
 
 ### SEGMENTATION
-from brainreg_segment.segmentation_panels.regions import RegionSeg
-from brainreg_segment.segmentation_panels.tracks import TrackSeg
-from brainreg_segment.tracks.IO import export_splines, save_track_layers
+from brainglobe_segmentation.segmentation_panels.regions import RegionSeg
+from brainglobe_segmentation.segmentation_panels.tracks import TrackSeg
+from brainglobe_segmentation.tracks.IO import export_splines, save_track_layers
 
 ### LAYOUT HELPERS
 

diff --git a/brainglobe_segmentation/segmentation_panels/regions.py b/brainglobe_segmentation/segmentation_panels/regions.py
@@ -1,7 +1,7 @@
 # RegionSeg
 from qtpy.QtWidgets import QGridLayout, QGroupBox
 
-from brainreg_segment.layout.gui_constants import (
+from brainglobe_segmentation.layout.gui_constants import (
     BRUSH_SIZE,
     CALCULATE_VOLUMES_DEFAULT,
     COLUMN_WIDTH,
@@ -11,13 +11,13 @@
     SEGM_METHODS_PANEL_ALIGN,
     SUMMARIZE_VOLUMES_DEFAULT,
 )
-from brainreg_segment.layout.gui_elements import (
+from brainglobe_segmentation.layout.gui_elements import (
     add_button,
     add_checkbox,
 )
-from brainreg_segment.layout.utils import display_info, display_warning
-from brainreg_segment.regions.analysis import region_analysis
-from brainreg_segment.regions.layers import (
+from brainglobe_segmentation.layout.utils import display_info, display_warning
+from brainglobe_segmentation.regions.analysis import region_analysis
+from brainglobe_segmentation.regions.layers import (
     add_existing_region_segmentation,
     add_new_region_layer,
     add_region_from_existing_layer,

diff --git a/brainglobe_segmentation/segmentation_panels/tracks.py b/brainglobe_segmentation/segmentation_panels/tracks.py
@@ -4,8 +4,8 @@
 import numpy as np
 from qtpy.QtWidgets import QGridLayout, QGroupBox
 
-from brainreg_segment.image.utils import create_KDTree_from_image
-from brainreg_segment.layout.gui_constants import (
+from brainglobe_segmentation.image.utils import create_KDTree_from_image
+from brainglobe_segmentation.layout.gui_constants import (
     COLUMN_WIDTH,
     FIT_DEGREE_DEFAULT,
     POINT_SIZE,
@@ -17,15 +17,15 @@
     SUMMARISE_TRACK_DEFAULT,
     TRACK_FILE_EXT,
 )
-from brainreg_segment.layout.gui_elements import (
+from brainglobe_segmentation.layout.gui_elements import (
     add_button,
     add_checkbox,
     add_float_box,
     add_int_box,
 )
-from brainreg_segment.layout.utils import display_info, display_warning
-from brainreg_segment.tracks.analysis import track_analysis
-from brainreg_segment.tracks.layers import (
+from brainglobe_segmentation.layout.utils import display_info, display_warning
+from brainglobe_segmentation.tracks.analysis import track_analysis
+from brainglobe_segmentation.tracks.layers import (
     add_existing_track_layers,
     add_new_track_layer,
     add_track_from_existing_layer,

diff --git a/brainglobe_segmentation/tracks/analysis.py b/brainglobe_segmentation/tracks/analysis.py
@@ -1,7 +1,7 @@
 import numpy as np
 import pandas as pd
 
-from brainreg_segment.tracks.fit import spline_fit
+from brainglobe_segmentation.tracks.fit import spline_fit
 
 
 def track_analysis(