v0.6.3

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #100
• Change cache path by @IgorTatarnikov in #101
• Schedule tests to run weekly by @IgorTatarnikov in #102
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #103
• use log10 for zero padding tiffs by @alessandrofelder in #104
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #105
• Notify slack on scheduled test failure by @IgorTatarnikov in #106
• Accept both .tif and .tiff files in directories by @IgorTatarnikov in #108

Full Changelog: v0.6.2...v0.6.3

v0.6.2

What's Changed

• Conform to new linting rules by @IgorTatarnikov in #97
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #96
• improve read_with_dask docs, ignore OME metadata by @alessandrofelder in #98

Full Changelog: v0.6.1...v0.6.2

v0.6.1

What's Changed

• handle nii.gz correctly by @alessandrofelder in #93
• Export cells to brainrender from brainmapper widget by @adamltyson in #95

Full Changelog: v0.6.0...v0.6.1

v0.6.0

v0.6.0

Adds a new brainmapper napari widget to transform points to atlas space

What's Changed

• Changed collapsed icon for CollapsibleWidget by @IgorTatarnikov in #78
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #80
• Remove nrrd IO by @adamltyson in #82
• Update supported python versions by @adamltyson in #81
• Add cell matching support by @matham in #74
• Provide optional dependencies for qt instead of napari by @niksirbi in #84
• Numpy 2.0 compliance by @IgorTatarnikov in #85
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #86
• Standardise contact information in readme by @adamltyson in #87
• Add transform widget by @adamltyson in #88

Full Changelog: v0.5.0...v0.6.0

v0.5.0

What's Changed

• Run CI on both types of Mac by @alessandrofelder in #71
• Support single z-stack tif file for input by @matham in #67
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #72
• Add image IO loading code from cellfinder & create image IO submodule within IO by @adamltyson in #73
• Be permissive about tiff axis metadata by @alessandrofelder in #75

New Contributors

• @matham made their first contribution in #67

Full Changelog: v0.4.3...v0.5.0

v0.4.3

What's Changed

• Add tests for cells sub-module by @K-Meech in #61
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #62
• Add tests for qtpy sub-module by @K-Meech in #64
• Convert remaining docstrings to numpydoc style by @K-Meech in #66
• Add docstrings and expand tests for IO sub-module by @K-Meech in #65
• Update Pathlib usage and docstrings by @willGraham01 in #68
• Expand header_widget to include doc path, citation and help text by @K-Meech in #70

Full Changelog: v0.4.2...v0.4.3

v0.4.2

What's Changed

• add tests for transforming to atlas space function by @alessandrofelder in #38
• Fix test that is still importing bg-atlasapi by @willGraham01 in #40
• Convert image_io docstrings to numpydoc style by @K-Meech in #43
• Add minisblack photometric to tiff writing by @K-Meech in #46
• Tests for the image_io sub-module by @K-Meech in #48
• Add save_any function to image_io by @K-Meech in #51
• Convert general submodule docstrings to numpydoc by @K-Meech in #53
• Add tests for brainmapper sub-module by @K-Meech in #52
• Handle str and pathlib.Path consistently in image_io by @K-Meech in #54
• Use codecov token in test_and_deploy by @K-Meech in #55
• Use data path and fixtures consistently by @K-Meech in #58
• Refactor ImageIOLoadException by @K-Meech in #59

New Contributors

• @K-Meech made their first contribution in #43

Full Changelog: v0.4.1...v0.4.2

v0.4.1

Bump to brainglobe-atlasapi dependency

bg-atlasapi has been renamed to brainglobe-atlasapi, so we now depend on the new package.

What's Changed

• bg-atlasapi -> brainglobe-atlasapi by @willGraham01 in #39

Full Changelog: v0.4.0...v0.4.1

v0.4.0

Incorporate imio functionality

What's Changed

• Debug failing regression test by @willGraham01 in #29
• Update test_and_deploy.yml by @alessandrofelder in #30
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #31
• Add manifest to ci by @willGraham01 in #32
• Merge imio in as image_io submodule by @willGraham01 in #33
• Add citation tool by @willGraham01 in #28

New Contributors

• @alessandrofelder made their first contribution in #30

Full Changelog: v0.3.6...v0.4.0

v0.3.6

What's Changed

• Move qtpy functionality from brainglobe-segmentation & cellfinder by @adamltyson in #27

Full Changelog: v0.3.5...v0.3.6