Skip to content

Issues: brainglobe/cellfinder

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

71 Open 166 Closed
71 Open 166 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[Feature] Run cell detection on subvolume of an image and not just select z planes enhancement New feature or request
#468 opened Nov 7, 2024 by IgorTatarnikov
Use yaml or yml consistently. bug Something isn't working
#465 opened Oct 23, 2024 by adamltyson
[Feature] expose GPU/CPU choice and other parameters to pytorch cellfinder version enhancement New feature or request
#464 opened Oct 18, 2024 by alessandrofelder
[BUG] Training stalls at the end of the first epoch with keras 3.6.0 bug Something isn't working
#463 opened Oct 9, 2024 by IgorTatarnikov
@IgorTatarnikov
2
Add to conda-forge enhancement New feature or request
#456 opened Sep 11, 2024 by adamltyson
[Feature] Inform the user when they supply just the weights in place of the full model enhancement New feature or request
#454 opened Aug 21, 2024 by IgorTatarnikov
Update pytorch version enhancement New feature or request
#451 opened Aug 19, 2024 by adamltyson
[Feature] an (existing, like ImageJ model zoo - or new) place to share cellfinder models enhancement New feature or request
#450 opened Aug 9, 2024 by alessandrofelder
1
Tests are failing with napari 0.5.0 bug Something isn't working
#443 opened Jul 11, 2024 by adamltyson
6
[Feature] Use a registry file for test data instead of hard-coding paths in conftest.py enhancement New feature or request
#439 opened Jun 6, 2024 by alessandrofelder
5
Check performance on Windows enhancement New feature or request
#426 opened May 28, 2024 by adamltyson
napari plugin does not allow use of trained weights (without model file) enhancement New feature or request
#425 opened May 28, 2024 by adamltyson
Improve printing & logging enhancement New feature or request
#424 opened May 23, 2024 by adamltyson
Move imports out of functions enhancement New feature or request
#423 opened May 23, 2024 by adamltyson
[BUG] Kernel crashes when running the example bug Something isn't working
#415 opened May 7, 2024 by priya-velu5
4
Standardise the use of axes in cellfinder enhancement New feature or request
#413 opened May 7, 2024 by adamltyson
2
[Feature] Benchmark napari versus brainmapper code enhancement New feature or request
#391 opened Feb 27, 2024 by alessandrofelder
[Feature] Refactor so THRESHOLD and SOMA_CENTRE_VALUE are defined in one place enhancement New feature or request
#387 opened Feb 16, 2024 by alessandrofelder
[Feature] Allow the user to select points from more than one layer at once in the curation interface enhancement New feature or request
#362 opened Jan 16, 2024 by adamltyson
2
Update the sample data cellfinder-napari Issue concerns the napari plugin enhancement New feature or request
#305 opened Dec 3, 2023 by adamltyson
Update cell classification network cellfinder-core Issue concerns the core backend enhancement New feature or request
#267 opened Nov 29, 2023 by adamltyson
@IgorTatarnikov
1
Investigate parameter combinations causing cellfinder to stall bug Something isn't working cellfinder-core Issue concerns the core backend
#270 opened Oct 12, 2023 by adamltyson
Add benchmarks for training [Feature] cellfinder-core Issue concerns the core backend enhancement New feature or request
#274 opened Jul 20, 2023 by sfmig
@sfmig
[BUG] mypy needs stub file for cellfinder-core bug Something isn't working cellfinder-core Issue concerns the core backend
#278 opened Jul 6, 2023 by willGraham01
Avoid hard-coding of ~/.brainglobe/cellfinder/models cellfinder-core Issue concerns the core backend
#280 opened Jul 3, 2023 by alessandrofelder
1
ProTip! Type g i on any issue or pull request to go back to the issue listing page.