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camilolaiton/README.md

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  1. AllenNeuralDynamics/aind-smartspim-pipeline AllenNeuralDynamics/aind-smartspim-pipeline Public

    Repository that hosts the SmartSPIM pipeline code

    Nextflow 2 1

  2. AllenNeuralDynamics/aind-large-scale-cellpose AllenNeuralDynamics/aind-large-scale-cellpose Public

    Large-scale cell segmentation with cellpose.

    Python 4

  3. AllenNeuralDynamics/aind-z1-spot-detection AllenNeuralDynamics/aind-z1-spot-detection Public

    Scripts to detect spots on Z1 data

    Python 1

  4. SelfAttention3DBrainSegmentation SelfAttention3DBrainSegmentation Public

    Code for my master thesis

    Jupyter Notebook 1

  5. AllenNeuralDynamics/aind-large-scale-prediction AllenNeuralDynamics/aind-large-scale-prediction Public

    Large-scale prediction framework

    Python 1

  6. AllenNeuralDynamics/aind-smartspim-stitch AllenNeuralDynamics/aind-smartspim-stitch Public

    Stitching and fusion pipeline in the cloud

    Python 3 2