Version 1.3. Networkx 2.4 copatibility issues fix. No algorithm changes.

networkx 2.4 compatibility version bump

1.2. Fixing Networkx 2.2+ compatibility issues. No algorithm changes.

Version 1.2 (fix Networkx 2.2+ compatibility)

v1.1.0b15 -- everything is in order

This release contains most up to date collection of utility scripts for CAMSA, allowing for processing of scaffolding results from:

• fasta
• agpv2.0
• agouti
• grimm
• ragout

and the merged results to the aforementioned formats (when possible).

Internal structure of the project is updated, ensuring the correct utilization and instaallation of the networkx graph object library.

v1.0.0-beta.1

This is the first release of CAMSA (beta), that supports beta functionality and is intended for public use. We encourage usage of this version of the product and submission of any identified bugs as well as feature suggestions.

Changelog

Core

• added support for multiple scaffold assemblies comparative analysis w.r.t identifying in / out - (semi) - conflicts of individual assembly points
• added support for merging of multiple scaffold assemblies in a single one, implementing two heuristic strategies _maximal-matching_ and _progressive merging_
• added a comprehensive interactive report generation

Utils

• added fasta2camsa_points.py script, which allows for translation of FASTA formatted scaffolding results (with the use of NUCmer) into CAMSA supported input

Other

• added PyPI disctribution