(Auto) Tests #159
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| name: (Auto) Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| # Run tests every week on sundays | |
| schedule: | |
| - cron: "0 0 * * 0" | |
| jobs: | |
| # Job (1): Run testing in parallel against multiples OSs and Python versions | |
| test: | |
| name: Test | |
| runs-on: ${{ matrix.os }} | |
| # Determines whether the entire workflow should pass/fail based on parallel jobs | |
| continue-on-error: ${{ matrix.experimental }} | |
| defaults: | |
| # This ensures each step gets properly configured bash shell for conda commands to work | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # OSs to test | |
| os: [ubuntu-latest, macos-latest] | |
| # Python versions to test | |
| python-version: [3.8, 3.9, '3.10'] | |
| # By default everything should pass for the workflow to pass | |
| experimental: [false] | |
| include: | |
| # Windows sometimes fails to install due to dependency changes, but eventually sort themselves out. So let these tests fail. Also issue on macos 3.11 with joblib so let that fail | |
| - os: windows-latest | |
| python-version: 3.8 | |
| experimental: true | |
| - os: windows-latest | |
| python-version: 3.9 | |
| experimental: true | |
| - os: windows-latest | |
| python-version: '3.10' | |
| experimental: true | |
| - os: windows-latest | |
| python-version: 3.11 | |
| experimental: true | |
| - os: macos-latest | |
| python-version: 3.11 | |
| experimental: true | |
| - os: ubuntu-latest | |
| python-version: 3.11 | |
| experimental: false | |
| - os: macos-14 | |
| python-version: 3.8 | |
| experimental: true | |
| - os: macos-14 | |
| python-version: 3.9 | |
| experimental: true | |
| - os: macos-14 | |
| python-version: '3.10' | |
| experimental: true | |
| - os: macos-14 | |
| python-version: 3.11 | |
| experimental: true | |
| steps: | |
| # Step up miniconda | |
| - name: Download and setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| # Check out latest code on github | |
| - name: Checkout Code | |
| uses: actions/checkout@v2 | |
| # Install common sci-py packages via conda as well as testing packages and requirements | |
| - name: Install Dependencies | |
| run: | | |
| conda activate test | |
| conda env list | |
| pip install -r requirements-dev.txt | |
| pip install -r optional-dependencies.txt | |
| # Check code formatting | |
| - name: Check code formatting | |
| run: | | |
| conda activate test | |
| black --version | |
| black --check --diff --verbose nltools | |
| # Actually run the tests with coverage | |
| - name: Run Tests | |
| run: | | |
| conda activate test | |
| coverage run --source=nltools -m pytest -rs | |
| # Send coverage to coveralls.io but waiting on parallelization to finish | |
| # Not using the official github action in the marketplace to upload because it requires a .lcov file, which pytest doesn't generate. It's just easier to use the coveralls python library which does the same thing, but works with pytest. | |
| - name: Upload Coverage | |
| # The coveralls python package has some 422 server issues with uploads from github-actions so try both service providers, for more see: | |
| # https://github.com/TheKevJames/coveralls-python/issues/252 | |
| run: coveralls --service=github || coveralls --service=github-actions | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: $${{ matrix}} | |
| COVERALLS_PARALLEL: true | |
| # Job (2): Send a finish notification to coveralls.io to integrate coverage across parallel tests | |
| coveralls: | |
| name: Coveralls.io Upload | |
| needs: test | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| continue-on-error: true | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls | |
| coveralls --service=github --finish || coveralls --service=github-actions --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Job (3): Build docs, but don't deploy. This is effectively another layer of testing because of our sphinx-gallery auto-examples | |
| docs: | |
| name: Build docs and auto-examples | |
| runs-on: ubuntu-latest | |
| #TODO: Remove when upstream doc building issues are resolved | |
| continue-on-error: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Download and setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: 3.8 | |
| - name: Checkout Code | |
| uses: actions/checkout@v2 | |
| - name: Install Dependencies | |
| run: | | |
| conda activate test | |
| conda env list | |
| pip install -r requirements-dev.txt | |
| pip install -r optional-dependencies.txt | |
| - name: Build docs | |
| run: | | |
| cd docs | |
| make clean | |
| make html |