Upload v2.5.0 to Zenodo #2
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| name: Zenodo Upload | |
| run-name: Upload ${{ github.event.workflow_run.head_branch }} to Zenodo | |
| on: | |
| workflow_run: | |
| workflows: | |
| - PyPI Release | |
| types: | |
| - completed | |
| jobs: | |
| upload: | |
| name: Zenodo upload | |
| if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| runs-on: ubuntu-latest | |
| env: | |
| AUTH: 'Authorization: Bearer ${{ secrets.ZENODO_ACCESS_TOKEN }}' | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_branch }} | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: ${{ github.event.workflow_run.head_repository.name }}-dist | |
| path: 'dist' | |
| merge-multiple: true | |
| github-token: ${{ github.token }} | |
| run-id: ${{ github.event.workflow_run.id }} | |
| - name: Upload build artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ github.event.workflow_run.head_repository.name }}-dist | |
| path: 'dist' | |
| - name: Get latest deposition | |
| id: latest_depo | |
| env: | |
| API_URL: 'https://zenodo.org/api/deposit/depositions' | |
| run: | | |
| id=$(yq '.doi' CITATION.cff | awk -F'zenodo.' '{print $2}') | |
| res=$(curl -sSf -G -H "$AUTH" -d "q=conceptrecid:$id" $API_URL) | |
| published=$(echo "$res" | jq -r '.[0]?.submitted?') | |
| [[ published == false ]] && { echo "$res" | jq && exit 1; } | |
| echo "new_url=$(echo "$res" | jq -r '.[0].links.newversion')" >> $GITHUB_OUTPUT | |
| - name: Create a new version | |
| id: new_version | |
| env: | |
| API_URL: ${{ steps.latest_depo.outputs.new_url }} | |
| run: | | |
| res=$(curl -sSf -X POST -H "$AUTH" $API_URL) | |
| echo "metadata=$(echo "$res" | jq -c '{metadata: .metadata}')" >> $GITHUB_OUTPUT | |
| echo "files=$(echo "$res" | jq -c '[{self: .files[].links.self}]')" >> $GITHUB_OUTPUT | |
| echo "self_url=$(echo "$res" | jq -r '.links.self')" >> $GITHUB_OUTPUT | |
| echo "files_url=$(echo "$res" | jq -r '.links.files')" >> $GITHUB_OUTPUT | |
| echo "publish_url=$(echo "$res" | jq -r '.links.publish')" >> $GITHUB_OUTPUT | |
| echo "discard_url=$(echo "$res" | jq -r '.links.discard')" >> $GITHUB_OUTPUT | |
| - name: Update metadata content | |
| env: | |
| API_URL: ${{ steps.new_version.outputs.self_url }} | |
| CONTENT: 'Content-Type: application/json' | |
| METADATA: ${{ steps.new_version.outputs.metadata }} | |
| run: | | |
| update=$(yq -o=json '.' CITATION.cff | jq -c '{ | |
| title: .title, | |
| creators: [.authors[] | { | |
| name: (."family-names" + ", " + ."given-names"), | |
| orcid: .orcid | |
| }], | |
| description: .abstract, | |
| keywords: .keywords, | |
| version: .version, | |
| publication_date: ."date-released", | |
| license: {id: .license}, | |
| custom: {"code:codeRepository": ."repository-code"} | |
| }') | |
| data=$( | |
| echo "$METADATA" | | |
| jq --argjson update "$update" -c '{metadata: .metadata} | .metadata += $update' | |
| ) | |
| curl -sSf -X PUT -H "$AUTH" -H "$CONTENT" -d "$data" $API_URL -o /dev/null | |
| - name: Delete existing files | |
| env: | |
| FILES: ${{ steps.new_version.outputs.files }} | |
| run: | | |
| echo "$FILES" | jq -r '.[].self' | while read -r self; do | |
| curl -sSf -X DELETE -H "$AUTH" $self -o /dev/null | |
| done | |
| - name: Upload build files | |
| env: | |
| API_URL: ${{ steps.new_version.outputs.files_url }} | |
| run: | | |
| find ./dist -maxdepth 1 -type f | while read -r file; do | |
| curl -sSf -X POST -H "$AUTH" -F "file=@$file" $API_URL -o /dev/null | |
| done | |
| - name: Publish new version | |
| env: | |
| API_URL: ${{ steps.new_version.outputs.publish_url }} | |
| run: | | |
| res=$(curl -sSf -X POST -H "$AUTH" $API_URL) | |
| echo "$res" | jq 'del(.. | .links?)' | |
| echo "$(echo "$res" | jq -r '.doi_url')" >> $GITHUB_STEP_SUMMARY | |
| - name: Discard created version | |
| if: ${{ failure() && steps.new_version.conclusion == 'success' }} | |
| env: | |
| API_URL: ${{ steps.new_version.outputs.discard_url }} | |
| run: | | |
| curl -sSf -X POST -H "$AUTH" $API_URL -o /dev/null |