Fix issue 412, error when exporting a dataset to netcdf #1450
Workflow file for this run
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| name: CI tests Upstream | |
| # Daily tests with all un-pinned dependencies | |
| # Allows to be warned when argopy fail tests due to updates in dependencies | |
| on: | |
| schedule: | |
| - cron: "0 0 * * *" # Daily “At 00:00” UTC | |
| workflow_dispatch: # allows you to trigger the workflow run manually | |
| pull_request: | |
| types: [synchronize] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| id-token: write | |
| contents: read | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect upstream ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'euroargodev/argopy' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/ci-trigger@v1 | |
| id: detect-trigger | |
| with: | |
| keyword: "[test-upstream]" | |
| detect-ci-skip: | |
| name: detect upstream ci skip | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'euroargodev/argopy' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| skipped: ${{ steps.detect-skip.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/[email protected] | |
| id: detect-skip | |
| with: | |
| keyword: "[skip-ci]" | |
| core-free: | |
| # CI tests for environments with core requirements in free versions | |
| name: Core - Free - Py${{matrix.python-version}} - ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| needs: [detect-ci-trigger, detect-ci-skip] | |
| if: | | |
| always() | |
| && ( | |
| (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| || needs.detect-ci-trigger.outputs.triggered == 'true' | |
| || needs.detect-ci-skip.outputs.skipped == 'false' | |
| || contains(github.event.pull_request.labels.*.name, 'release') | |
| ) | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| # timeout-minutes: 45 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| steps: | |
| - name: Energy Estimation - Initialize | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| with: | |
| task: start-measurement | |
| company-uuid: ${{ secrets.CARBONDB_COMPANY_UUID }} | |
| project-uuid: ${{ secrets.CARBONDB_PROJECT_UUID }} | |
| machine-uuid: ${{ secrets.CARBONDB_MACHINE_UUID_PYTESTS_UPSTREAM }} | |
| continue-on-error: true | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/[email protected] | |
| with: | |
| aws-region: us-west-1 | |
| role-to-assume: arn:aws:iam::${{ secrets.AWS_ACCOUNT_ID }}:role/ga-ci-tests-argopy-01 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{matrix.python-version}}-core-free.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| echo "LOG_FILE=argopy-tests-Core-Free-Py${{matrix.python-version}}-${{matrix.os}}.log" >> $GITHUB_ENV | |
| - name: Setup Micromamba ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-name: argopy-tests | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: >- | |
| python=${{matrix.python-version}} | |
| - name: Install argopy | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| micromamba info | |
| micromamba list | |
| - name: Energy Estimation - Measure Tests Setup | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| env: | |
| ELECTRICITY_MAPS_TOKEN: ${{ secrets.ELECTRICITY_MAPS_TOKEN }} | |
| with: | |
| task: get-measurement | |
| label: 'setup core-free' | |
| continue-on-error: true | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra -v -s -c argopy/tests/pytest.ini --durations=10 \ | |
| --report-log output-${{ matrix.python-version }}-log.jsonl | |
| - name: Energy Estimation - Measure Tests Exec | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| env: | |
| ELECTRICITY_MAPS_TOKEN: ${{ secrets.ELECTRICITY_MAPS_TOKEN }} | |
| with: | |
| task: get-measurement | |
| label: 'pytest core-free' | |
| continue-on-error: true | |
| - name: Generate and publish a report on failure | |
| if: | | |
| failure() | |
| && github.repository_owner == 'euroargodev' | |
| uses: xarray-contrib/issue-from-pytest-log@main | |
| with: | |
| log-path: output-${{ matrix.python-version }}-log.jsonl | |
| issue-title: "Upstream CI tests failed: Core - Free - Py${{matrix.python-version}} - ${{ matrix.os }}" | |
| - name: Save tests log as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Argopy-Tests-Core-${{matrix.python-version}}-${{matrix.os}} | |
| path: output-${{ matrix.python-version }}-log.jsonl | |
| retention-days: 90 | |
| - name: Energy Estimation - Show Results | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| env: | |
| ELECTRICITY_MAPS_TOKEN: ${{ secrets.ELECTRICITY_MAPS_TOKEN }} | |
| with: | |
| task: display-results | |
| send-data: true | |
| continue-on-error: true | |
| all-free: | |
| # CI tests for environments with all possible requirements in free versions | |
| name: All - Free - Py${{matrix.python-version}} - ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| needs: [detect-ci-trigger, detect-ci-skip] | |
| if: | | |
| always() | |
| && ( | |
| (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| || needs.detect-ci-trigger.outputs.triggered == 'true' | |
| || needs.detect-ci-skip.outputs.skipped == 'false' | |
| || contains(github.event.pull_request.labels.*.name, 'release') | |
| ) | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| # timeout-minutes: 45 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| steps: | |
| - name: Energy Estimation - Initialize | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| with: | |
| task: start-measurement | |
| company-uuid: ${{ secrets.CARBONDB_COMPANY_UUID }} | |
| project-uuid: ${{ secrets.CARBONDB_PROJECT_UUID }} | |
| machine-uuid: ${{ secrets.CARBONDB_MACHINE_UUID_PYTESTS_UPSTREAM }} | |
| continue-on-error: true | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/[email protected] | |
| with: | |
| aws-region: us-west-1 | |
| role-to-assume: arn:aws:iam::${{ secrets.AWS_ACCOUNT_ID }}:role/ga-ci-tests-argopy-01 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{matrix.python-version}}-all-free.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Setup Micromamba ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-name: argopy-tests | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: >- | |
| python=${{matrix.python-version}} | |
| pytest-reportlog | |
| - name: Install argopy | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| micromamba info | |
| micromamba list | |
| - name: Energy Estimation - Measure Tests Setup | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| env: | |
| ELECTRICITY_MAPS_TOKEN: ${{ secrets.ELECTRICITY_MAPS_TOKEN }} | |
| with: | |
| task: get-measurement | |
| label: 'setup all-free' | |
| continue-on-error: true | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra -v -s -c argopy/tests/pytest.ini --durations=10 \ | |
| --report-log output-${{ matrix.python-version }}-log.jsonl | |
| - name: Energy Estimation - Measure Tests Exec | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| env: | |
| ELECTRICITY_MAPS_TOKEN: ${{ secrets.ELECTRICITY_MAPS_TOKEN }} | |
| with: | |
| task: get-measurement | |
| label: 'pytest all-free' | |
| continue-on-error: true | |
| - name: Save tests log as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Argopy-Tests-All-${{matrix.python-version}}-${{matrix.os}} | |
| path: output-${{ matrix.python-version }}-log.jsonl | |
| retention-days: 90 | |
| - name: Energy Estimation - Show Results | |
| if: ${{matrix.os == 'ubuntu-latest'}} | |
| uses: green-coding-berlin/eco-ci-energy-estimation@v4 | |
| env: | |
| ELECTRICITY_MAPS_TOKEN: ${{ secrets.ELECTRICITY_MAPS_TOKEN }} | |
| with: | |
| task: display-results | |
| send-data: true | |
| continue-on-error: true |