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1. NCBI-Hackathons/NovoGraph NCBI-Hackathons/NovoGraph Public

   NovoGraph: building whole genome graphs from long-read-based de novo assemblies

   Perl 45 8

2. kharchenkolab/conos kharchenkolab/conos Public

   R package for the joint analysis of multiple single-cell RNA-seq datasets

   R 202 39

3. kharchenkolab/pagoda2 kharchenkolab/pagoda2 Public

   R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

   JavaScript 217 47

4. edlibR edlibR Public

   R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).

   C++ 11 2

5. kharchenkolab/numbat kharchenkolab/numbat Public

   Haplotype-aware CNV analysis from single-cell RNA-seq

   R 172 23

6. kharchenkolab/N2R kharchenkolab/N2R Public

   R extensions to N2 implementing approximate nearest neighbor search methods

   C++ 10 3