Updated def and parentage. Fixes #20661

[sjm41]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-12/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-12/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity http://purl.obolibrary.org/obo/GO_0008834

Removed

• ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity SubClassOf prenyl diphosphate synthase activity

• ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity SubClassOf has participant some isopentenyl diphosphate(3-)

• ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity SubClassOf has participant some diphosphate(3-)

• ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity SubClassOf has participant some 2-trans,6-trans-farnesyl diphosphate(3-)

Added

• ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity SubClassOf ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity

prenyl diphosphate synthase activity http://purl.obolibrary.org/obo/GO_0120531

Removed

• prenyl diphosphate synthase activity definition "Catalysis of the transfer of a prenyl group from a prenyl diphosphate donor to an isopentenyl diphosphate (acceptor), resulting in chain elongation of allylic diphosphate substrates."

  • database_cross_reference "PMID:26216239"

  • database_cross_reference "PMID:12135472"

Added

• prenyl diphosphate synthase activity definition "Catalysis of chain elongation of prenyl diphosphate substrates via one or more condensation reactions with isopentenyl diphosphate to generate linear polymers with defined chain lengths."

  • database_cross_reference "PMID:26216239"

  • database_cross_reference "PMID:12135472"