make non-gzipped version of empties; for geneontology/pipeline#382

geneontology · Aug 11, 2024 · 20bbb9b · 20bbb9b
1 parent 03fccde
commit 20bbb9b
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/pipeline/Makefile b/pipeline/Makefile
@@ -116,10 +116,12 @@ GOA_UNIPROT_ALL = target/groups/goa/goa_uniprot_all_noiea.gpi target/groups/goa/
 # mv target/groups/goa/goa_uniprot_all.gaf.tmp target/groups/goa/goa_uniprot_all.gaf
 # gzip -cf target/groups/goa/goa_uniprot_all.gaf > target/groups/goa/goa_uniprot_all.gaf.gz
 # gzip -cf target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all_noiea.gaf.gz
-# rm -f target/groups/goa/goa_uniprot_all-src.gaf target/groups/goa/goa_uniprot_all.gaf || true
 target/groups/goa/goa_uniprot_all_noiea.gaf: target/alltaxons.txt target/groups/goa/goa_uniprot_all-src.gaf.gz
 	cp target/groups/goa/goa_uniprot_all-src.gaf.gz target/groups/goa/goa_uniprot_all.gaf.gz
 	cp target/groups/goa/goa_uniprot_all-src.gaf.gz target/groups/goa/goa_uniprot_all_noiea.gaf.gz
+	gzip -dcf target/groups/goa/goa_uniprot_all-src.gaf.gz | target/groups/goa/goa_uniprot_all.gaf
+	gzip -dcf target/groups/goa/goa_uniprot_all-src.gaf.gz | target/groups/goa/goa_uniprot_all_noiea.gaf
+	rm -f target/groups/goa/goa_uniprot_all-src.gaf target/groups/goa/goa_uniprot_all.gaf || true
 
 RDF_GEN = rdfgen.py
 target/groups/goa/goa_uniprot_all_noiea_cam.ttl: target/go-ontology.json target/groups/goa/goa_uniprot_all_noiea.gaf