Update gorules_test_errors.gaf

geneontology · Sep 26, 2023 · 285bffa · 285bffa
1 parent ab6fd64
commit 285bffa
Showing 1 changed file with 6 additions and 4 deletions.
diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf
@@ -49,6 +49,8 @@ UniProtKB	A0A078CGE6	M3KE1	enables	GO:0004674	PMID:11489177	IPI		F	GORULE:000000
 UniProtKB	Q9DGE2	mapk14a	is_active_in	GO:0005622	PMID:10995439	IDA		C	GORULE:0000008-1 Mitogen-activated protein kinase 14A	mapk14a|mapk14	protein	taxon:7955	20180129	UniProt
 ! FAILS GORULE:0000008 - TEST 2 - GO:0007049 is in the subset gocheck_do_not_manually_annotate
 UniProtKB	Q9WVH3	Foxo4	involved_in	GO:0007049	PMID:12048180	IDA		P	GORULE:0000008-2 Forkhead box protein O4	Foxo4|Afx|Afx1	protein	taxon:10090	20110425	MGI
+! FAILS GORULE:0000008 - TEST 3 - also fails GORULE:0000051 - GO:0005488 is in the subset gocheck_do_not_manually_annotate
+UniProtKB	O76187	darA	enables	GO:0005488	PMID:9802899	IPI	UniProtKB:P34149	F	GORULE:0000051-1 & GORULE:0000008-3 Darlin	darA	protein	taxon:44689	20100205	UniProt
 ! FAILS GORULE:0000011 - TEST 1 - because the GO ID is not one of GO:0003674, GO:0008150 or GO:0005575
 UniProtKB	Q4KA26	PFL_3807	is_active_in	GO:0016020	GO_REF:0000015	ND		C	GORULE:0000011-1 Putative membrane protein	PFL_3807	protein	taxon:220664	20090717	JCVI
 ! FAILS GORULE:0000011 - TEST 2 - fails because the evidence code is not ND, even if the GO ID one of GO:0003674, GO:0008150 or GO:0005575.
@@ -125,10 +127,10 @@ UniProtKB	F1N2N9	ODAD1	part_of	GO:0120228	PMID:34715025	ISS	UniProtKB:F1N2N9	C	G
 UniProtKB	F1N2N9	ODAD1	part_of	GO:0120228	PMID:34715025	ISO	UniProtKB:F1N2N9	C	GORULE:0000050-2 Outer dynein arm-docking complex subunit 1	ODAD1|CCDC114	protein	taxon:9913	20220422	UniProt
 ! FAILS GORULE:0000050 - TEST 3 - self-referential ISA annotations 
 UniProtKB	F1N2N9	ODAD1	part_of	GO:0120228	PMID:34715025	ISA	UniProtKB:F1N2N9	C	GORULE:0000050-3 Outer dynein arm-docking complex subunit 1	ODAD1|CCDC114	protein	taxon:9913	20220422	UniProt
-! FAILS GORULE:0000051 - Pass TEST 51 - Annotation extension for certain GO terms - protein binding; GO:0005515
-UniProtKB	O76187	darA	enables	GO:0005515	PMID:9802899	IPI	UniProtKB:P34149	F	GORULE:0000051-1 Darlin	darA	protein	taxon:44689	20100205	UniProt	has_input(GO:0003674)|occurs_in(CL:123456)
-! FAILS GORULE:0000051 - TEST 51 - Annotation extension is required for certain terms - binding GO:0005488 
-UniProtKB	O76187	darA	enables	GO:0005488	PMID:9802899	IPI	UniProtKB:P34149	F	GORULE:0000051-2 Darlin	darA	protein	taxon:44689	20100205	UniProt
+! FAILS GORULE:0000051 - Pass RULE 51 - Annotation extension for certain GO terms - protein binding; GO:0005515
+UniProtKB	O76187	darA	enables	GO:0005515	PMID:9802899	IPI	UniProtKB:P34149	F	GORULE:0000051-PASS1 Darlin	darA	protein	taxon:44689	20100205	UniProt	has_input(GO:0003674)|occurs_in(CL:123456)
+! FAILS GORULE:0000051 - TEST 1 - also fails GORULE:0000008 - Annotation extension is required for certain terms - binding GO:0005488 
+UniProtKB	O76187	darA	enables	GO:0005488	PMID:9802899	IPI	UniProtKB:P34149	F	GORULE:0000051-1 & GORULE:0000008-3 Darlin	darA	protein	taxon:44689	20100205	UniProt
 ! FAILS GORULE:0000055 - TEST 1 - Two references in the same ID space - PMID
 PlasmoDB	PF3D7_0200400	PF3D7_0200400	is_active_in	GO:0020036	PMID:12477793|PMID:15961998	IDA		C	GORULE:0000055-1	stevor	mRNA	taxon:4896	20131007	GeneDB
 ! FAILS GORULE:0000055 - TEST 2 -  Two references in the same ID space - GO_REF