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Update gorules_test_errors.gaf
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@pgaudet
pgaudet authored Sep 26, 2023
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Expand Up @@ -79,6 +79,10 @@ UniProtKB P04995 sbcB involved_in GO:0090503 GO_REF:0000108 IEA GO:0000175 P GOR
TriTrypDB Tb11.02.5420b Tb11.02.5420b located_in GO:0016021 GO_REF:0000002 ISO GeneDB:Tb11.02.5420 C GORULE:0000020-2 NADPH-cytochrome p450 reductase, putative mRNA taxon:185431 20130726 GeneDB
! FAILS GORULE:0000020 - TEST 3 - obsolete term in 'with' (column 8) with no replacement
MGI:1100518 Smad7 bla involved_in GO:0017015 MGI:MGI:3836072|PMID:18952608 IC GO:0060389 P GORULE:0000020-3 SMAD protein_coding_gene taxon:10090 20090211 BHF-UCL
! FAILS GORULE:0000020 - TEST 4 - obsolete term in 'extension' (column 16) with no replacement
UniProtKB O76187 darA enables GO:0004672 PMID:9802899 IPI UniProtKB:P34149 P GORULE:0000020-4 Darlin darA protein taxon:44689 20100205 UniProt involved_in(GO:0090503)
! FAILS GORULE:0000020 - TEST 5 - obsolete term in 'extension' (column 16) with a replacement
UniProtKB O76187 darA enables GO:0004672 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000020-5 Darlin darA protein taxon:44689 20100205 UniProt involved_in(GO:0014067)
! FAILS GORULE:0000027 - TEST 1 - bad GO ID syntax
PomBase SPAC25B8.17 ypf1 is_active_in BAD_GO_ID GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-1 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase
! FAILS GORULE:0000027 - TEST 2 - bad GO ID syntax; no colon
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