Update gorules_test_errors.gpad

geneontology · Jul 26, 2024 · e3d9d57 · e3d9d57
1 parent 067db9d
commit e3d9d57
Showing 1 changed file with 28 additions and 0 deletions.
diff --git a/docs/gorules_test_errors.gpad b/docs/gorules_test_errors.gpad
@@ -89,6 +89,34 @@ UniPotKB:Q9HC96		RO:0002331	GO:0006921	PMID:PMID:14561399	ECO:0000314			2022-06-
 UniPotKB:Q9HC96		RO:0002331	GO:0006921	PMID:unpublished	ECO:0000314			2022-06-06	GO_Central		GORULE_TEST0000027-4 Calpain-10	
 ! FAILS GORULE:0000027 - TEST 5 - Bad reference syntax												
 UniPotKB:Q9HC96		RO:0002331	GO:0006921	PMID:0.	ECO:0000314			2022-06-06	GO_Central		GORULE_TEST:0000027-5 Calpain-10	
+! FAILS GORULE:0000027 - TEST 6 - Prefix is a synonyms in /db-xrefs.yaml and IS REPAIRED																									
+WormBase:WBGene00000002		BFO:0000050	GO:1990184	WB_REF:WBPaper00006408|PMID:14668347	ECO:0000021			2013-10-22	GO_Central		GORULE_TEST:0000027-6 F27C8.1														
+! FAILS GORULE:0000027 - TEST 7 - bad id syntax: WB needs 8 digits, has only 7																									
+WormBase:WBGene00000002		BFO:0000050	GO:1990184	WB_REF:WBPaper00006408|PMID:14668347	ECO:0000021			2013-10-22	GO_Central		GORULE_TEST:0000027-7 F27C8.1														
+! FAILS GORULE:0000027 - TEST 8 - caolumn 2 cardinality should be 1																									
+WormBase:WBGene00000002|WBGene00000003		BFO:0000050	GO:1990184	WB_REF:WBPaper00006408|PMID:14668347	ECO:0000021			2013-10-22	GO_Central		GORULE_TEST:0000027-8 F27C8.1														
+! SHOULD PASS GORULE:0000027 - TEST 9 - 2 values in with field, pipe-separated																									
+UniProtKB:Q6UW15		RO:0002331	GO:0006401	PMID:16931762	ECO:0000316			2013-10-22	GO_Central		GORULE_TEST:0000027-9 Regenerating islet-derived protein 3-gamma														
+! FAILS GORULE:0000027 - TEST 10 - 2 values in 'with' field, comma-separated																									
+UniProtKB:Q6UW15		RO:0002331	GO:0006401	PMID:16931762	ECO:0000316			2013-10-22	GO_Central		GORULE_TEST:0000027-10 Regenerating islet-derived protein 3-gamma														
+! FAILS GORULE:0000027 - TEST 11 - 2 values in 'with' field, second namespace missing																									
+UniProtKB:Q6UW15		RO:0002331	GO:0006401	PMID:16931762	ECO:0000316			2013-10-22	GO_Central		GORULE_TEST:0000027-11 Regenerating islet-derived protein 3-gamma														
+! FAILS GORULE:0000027 - TEST 12 - 'with' prefix not in /db-xrefs.yaml																									
+UniProtKB:Q6UW15		RO:0002331	GO:0006401	PMID:16931762	ECO:0000316			2013-10-22	GO_Central		GORULE_TEST:0000027-12 Regenerating islet-derived protein 3-gamma														
+! FAILS GORULE:0000027 - TEST 13 - 'with' Prefix is a synonyms in /db-xrefs.yaml and IS REPAIRED																									
+FB:FBgn0020238		RO:0002331	GO:0006401	PMID:16931762	ECO:0000316			2013-10-22	GO_Central		GORULE_TEST:0000027-13 14-3-3epsilon														
+! FAILS GORULE:0000027 - TEST 14 - 'bad with' id syntax  - should have 7 digits, has 8																									
+FB:FBgn0020238		RO:0002331	GO:0006401	PMID:16931762	ECO:0000316			2013-10-22	GO_Central		GORULE_TEST:0000027-14 14-3-3epsilon														
+! SHOULD PASS GORULE:0000027 - TEST 15 - Two references	in different ID spaces, space separated																								
+FB:FBgn0024811		RO:0002331	GO:0048010	FB:FBrf0180198|PMID:15457211	ECO:0000315			2013-10-22	GO_Central		GORULE_TEST:0000027-15 Crk oncogene														
+! FAILS GORULE:0000027 - TEST 16 - Two references in different ID spaces																									
+FB:FBgn0024811		RO:0002331	GO:0048010	FB:FBrf0180198 PMID:15457211	ECO:0000315			2013-10-22	GO_Central		GORULE_TEST:0000027-16 Crk oncogene														
+! FAILS GORULE:0000027 - TEST 17 - bad PMID ID syntax																									
+FB:FBgn0024811		RO:0002331	GO:0048010	FB:FBrf0180198|PMID:1545721X	ECO:0000315			2013-10-22	GO_Central		GORULE_TEST:0000027-17 Crk oncogene														
+! SHOULD PASS GORULE:0000027 - TEST 18 - 'Assigned by' is in groups.yaml (but not in dbxref.yaml)																									
+UniProtKB:Q6UW15		RO:0002331	GO:0006401	PMID:16931762	ECO:0000314			2013-10-22	LBL		GORULE_TEST:0000027-18 Regenerating islet-derived protein 3-gamma														
+! FAILS GORULE:0000027 - TEST 19 - 'Assigned by' is in dbxref.yaml but not in groups.yaml																									
+UniProtKB:Q6UW15		RO:0002331	GO:0006401	PMID:16931762	ECO:0000314			2013-10-22	PO		GORULE_TEST:0000027-18 Regenerating islet-derived protein 3-gamma														
 ! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P												
 UniPotKB:Q9HC96		RO:0002331	GO:0006921	PMID:23072806	ECO:0000314			2022-06-06	GO_Central		GORULE_TEST:0000028-1 Calpain-10	
 ! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P