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Add legend graphic to CX2 network descriptions #36

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merged 1 commit into from
Dec 11, 2024
Merged

Add legend graphic to CX2 network descriptions #36

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7 changes: 7 additions & 0 deletions src/gocam/translation/cx2/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -48,6 +48,12 @@
"Xenopus",
]

# This graph was produced by the NDEx team based on the style attributes in our CX2 networks. This
# image gets referenced in the network description. It seems a bit fragile to have this static image
# with no process in place to update it if the style changes. But the NDEx folks were fairly
# insistent that we include a legend graphic in the network description.
LEGEND_GRAPHIC_SRC = "https://home.ndexbio.org/img/go-cam_legend_2024108_v2.png"


def _remove_species_code_suffix(label: str) -> str:
for code in SPECIES_CODES:
Expand Down Expand Up @@ -155,6 +161,7 @@ def _add_input_output_nodes(
"@context": json.dumps(go_context.as_dict()),
"name": gocam.title if gocam.title is not None else gocam.id,
"prov:wasDerivedFrom": go_converter.expand(gocam.id),
"description": f"<p><img src=\"{LEGEND_GRAPHIC_SRC}\" style=\"width: 100%;\"/></p>"
}
)
# This gets added separately so we can declare the datatype
Expand Down
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