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automated commit replacing obsolete ontology terms
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kltm committed Dec 13, 2024
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12 changes: 7 additions & 5 deletions models/5993df9e00000138.ttl
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Expand Up @@ -51,9 +51,10 @@
<https://w3id.org/biolink/vocab/in_taxon> <http://purl.obolibrary.org/obo/NCBITaxon_6239> ;
<http://www.geneontology.org/formats/oboInOwl#id> "gomodel:5993df9e00000138"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#Ontology> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-12-12: GO:0033207 replaced by GO:0033842" ;
<http://purl.org/dc/elements/1.1/title> "The directed migration of gonadal distal tip cells in Caenorhabditis elegans requires NGAT-1, a ß1,4-N-acetylgalactosaminyltransferase enzyme"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-1706-4196"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2017-08-20"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5993df9e00000138/5993df9e00000146> a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/wormbase/WBGene00012206> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-1706-4196"^^<http://www.w3.org/2001/XMLSchema#string> ;
Expand All @@ -64,9 +65,10 @@
<http://purl.obolibrary.org/obo/RO_0002333> <http://model.geneontology.org/5993df9e00000138/5993df9e00000146> ;
<http://purl.obolibrary.org/obo/BFO_0000050> <http://model.geneontology.org/5993df9e00000138/5993df9e00000148> ;
<http://purl.obolibrary.org/obo/BFO_0000066> <http://model.geneontology.org/5993df9e00000138/5993df9e00000149> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0033207> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0033842> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-12-12: GO:0033207 replaced by GO:0033842" ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-1706-4196"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2017-08-20"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5993df9e00000138/5993df9e00000148> <http://geneontology.org/lego/hint/layout/x> "197"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "138"^^<http://www.w3.org/2001/XMLSchema#string> ;
Expand Down Expand Up @@ -108,10 +110,10 @@
<http://purl.org/dc/elements/1.1/date> "2017-08-20"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/source> "PMID:28817611"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://purl.obolibrary.org/obo/GO_0033207> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0097628> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0033842> a <http://www.w3.org/2002/07/owl#Class> .

<http://www.w3.org/2000/01/rdf-schema#comment> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .

<http://www.w3.org/2000/01/rdf-schema#label> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .
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13 changes: 7 additions & 6 deletions models/5e72450500004019.ttl
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Expand Up @@ -91,8 +91,6 @@

<http://purl.obolibrary.org/obo/GO_0039606> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0039501> a <http://www.w3.org/2002/07/owl#Class> .

<http://identifiers.org/uniprot/P52292> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/RO_0012009> a <http://www.w3.org/2002/07/owl#ObjectProperty> .
Expand Down Expand Up @@ -131,6 +129,8 @@

<http://purl.obolibrary.org/obo/GO_0061578> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0039502> a <http://www.w3.org/2002/07/owl#Class> .

<http://identifiers.org/uniprot/Q14653-5> a <http://www.w3.org/2002/07/owl#Class> .

<http://identifiers.org/uniprot/P0DTC6> a <http://www.w3.org/2002/07/owl#Class> .
Expand Down Expand Up @@ -162,11 +162,11 @@
<http://www.w3.org/2002/07/owl#versionIRI> <http://model.geneontology.org/5e72450500004019> ;
<https://w3id.org/biolink/vocab/in_taxon> <http://purl.obolibrary.org/obo/NCBITaxon_9606> , <http://purl.obolibrary.org/obo/NCBITaxon_2697049> , <http://identifiers.org/uniprot/P0DTD1> ;
a <http://www.w3.org/2002/07/owl#Ontology> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002629" , "Automated change 2023-03-16: RO:0002212 replaced by RO:0002630" ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002629" , "Automated change 2023-03-16: RO:0002212 replaced by RO:0002630" , "Automated change 2024-12-12: GO:0039501 replaced by GO:0039502" ;
<http://purl.org/dc/elements/1.1/title> """SARS-COV2/HOST
"""^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-7646-0052"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-03-16"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5e72450500004019/5e72450500004020> <http://geneontology.org/lego/hint/layout/x> "579"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "47"^^<http://www.w3.org/2001/XMLSchema#string> ;
Expand Down Expand Up @@ -475,9 +475,10 @@
<http://model.geneontology.org/5e72450500004019/5e72450500004114> <http://geneontology.org/lego/hint/layout/x> "1837"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "12"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0039501> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0039502> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-12-12: GO:0039501 replaced by GO:0039502" ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-7646-0052"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2021-04-27"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5e72450500004019/5e72450500004217> <http://geneontology.org/lego/hint/layout/x> "260"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "355"^^<http://www.w3.org/2001/XMLSchema#string> ;
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11 changes: 6 additions & 5 deletions models/5fadbcf000000208.ttl
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Expand Up @@ -51,7 +51,7 @@

<http://identifiers.org/uniprot/P38936> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0006978> a <http://www.w3.org/2002/07/owl#Class> .
<http://purl.obolibrary.org/obo/GO_0030330> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0031571> a <http://www.w3.org/2002/07/owl#Class> .

Expand All @@ -63,10 +63,10 @@
<http://purl.org/pav/providedBy> "http://greekc.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
<https://w3id.org/biolink/vocab/in_taxon> <http://purl.obolibrary.org/obo/NCBITaxon_9606> ;
a <http://www.w3.org/2002/07/owl#Ontology> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002407" , "Automated change 2022-04-14: <http://purl.obolibrary.org/obo/GO_0000790> replaced_by <http://purl.obolibrary.org/obo/GO_0000785>" , "Automated change 2022-04-14: <http://purl.obolibrary.org/obo/GO_0044783> replaced_by <http://purl.obolibrary.org/obo/GO_0031571>" ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002407" , "Automated change 2022-04-14: <http://purl.obolibrary.org/obo/GO_0000790> replaced_by <http://purl.obolibrary.org/obo/GO_0000785>" , "Automated change 2022-04-14: <http://purl.obolibrary.org/obo/GO_0044783> replaced_by <http://purl.obolibrary.org/obo/GO_0031571>" , "Automated change 2024-12-12: GO:0006978 replaced by GO:0030330" ;
<http://purl.org/dc/elements/1.1/title> "TP53 DNA-binding transcription factor"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-8534-6582"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-03-16"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5fadbcf000000208/5fadbcf000000211> <http://geneontology.org/lego/hint/layout/x> "271.875"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "381.25"^^<http://www.w3.org/2001/XMLSchema#string> ;
Expand All @@ -89,9 +89,10 @@
<http://geneontology.org/lego/hint/layout/y> "75"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/pav/providedBy> "http://greekc.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.obolibrary.org/obo/RO_0002233> <http://model.geneontology.org/5fadbcf000000208/5fadbcf000000282> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0006978> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0030330> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-12-12: GO:0006978 replaced by GO:0030330" ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-8534-6582"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2022-05-24"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/5fadbcf000000208/5fadbcf000000219> <http://purl.org/pav/providedBy> "http://greekc.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0000785> ;
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18 changes: 9 additions & 9 deletions models/61f34dd300001044.ttl
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Expand Up @@ -163,10 +163,10 @@
<http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> , "http://www.wormbase.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
<https://w3id.org/biolink/vocab/in_taxon> <http://purl.obolibrary.org/obo/NCBITaxon_559292> , <http://purl.obolibrary.org/obo/NCBITaxon_9823> ;
a <http://www.w3.org/2002/07/owl#Ontology> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002629" , "Automated change 2024-09-26: GO:0047012 replaced by GO:0102191" ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002629" , "Automated change 2024-09-26: GO:0047012 replaced by GO:0102191" , "Automated change 2024-12-12: GO:0102191 replaced by GO:0102175" ;
<http://purl.org/dc/elements/1.1/title> "Yeast ergosterol"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-1706-4196"^^<http://www.w3.org/2001/XMLSchema#string> , "https://orcid.org/0000-0002-4187-2863"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2024-09-26"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/61f34dd300001044/61f34dd300001045> <http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/CHEBI_57288> ;
Expand Down Expand Up @@ -864,10 +864,10 @@
<http://purl.obolibrary.org/obo/BFO_0000066> <http://model.geneontology.org/61f34dd300001044/61f34dd300001211> ;
<http://purl.obolibrary.org/obo/RO_0002233> <http://model.geneontology.org/61f34dd300001044/61f34dd300001190> ;
<http://purl.obolibrary.org/obo/RO_0002234> <http://model.geneontology.org/61f34dd300001044/61f34dd300001218> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0102191> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-09-26: GO:0047012 replaced by GO:0102191" ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0102175> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-09-26: GO:0047012 replaced by GO:0102191" , "Automated change 2024-12-12: GO:0102191 replaced by GO:0102175" ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-1706-4196"^^<http://www.w3.org/2001/XMLSchema#string> , "https://orcid.org/0000-0002-4187-2863"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2024-09-26"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/61f34dd300001044/61f34dd300001209> <http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/sgd/S000002969> ;
Expand Down Expand Up @@ -1119,10 +1119,10 @@
<http://purl.obolibrary.org/obo/BFO_0000066> <http://model.geneontology.org/61f34dd300001044/6205c24300000119> ;
<http://purl.obolibrary.org/obo/RO_0002233> <http://model.geneontology.org/61f34dd300001044/6205c24300000115> ;
<http://purl.obolibrary.org/obo/RO_0002413> <http://model.geneontology.org/61f34dd300001044/6205c24300000121> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0102191> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-09-26: GO:0047012 replaced by GO:0102191" ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0102175> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-09-26: GO:0047012 replaced by GO:0102191" , "Automated change 2024-12-12: GO:0102191 replaced by GO:0102175" ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0002-1706-4196"^^<http://www.w3.org/2001/XMLSchema#string> , "https://orcid.org/0000-0002-4187-2863"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2024-09-26"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/61f34dd300001044/6205c24300000117> <http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://identifiers.org/sgd/S000002969> ;
Expand Down Expand Up @@ -1924,7 +1924,7 @@

<http://purl.obolibrary.org/obo/GO_0051996> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0102191> a <http://www.w3.org/2002/07/owl#Class> .
<http://purl.obolibrary.org/obo/GO_0102175> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.org/dc/elements/1.1/title> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .

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11 changes: 6 additions & 5 deletions models/627d95ee00001405.ttl
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Expand Up @@ -57,10 +57,10 @@
<http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
<https://w3id.org/biolink/vocab/in_taxon> <http://purl.obolibrary.org/obo/NCBITaxon_9606> , <http://purl.obolibrary.org/obo/NCBITaxon_2697049> ;
a <http://www.w3.org/2002/07/owl#Ontology> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002629" , "Automated change 2022-09-22: GO:0005887 replaced by GO:0005886" ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2023-03-16: RO:0002213 replaced by RO:0002629" , "Automated change 2022-09-22: GO:0005887 replaced by GO:0005886" , "Automated change 2024-12-12: GO:0019049 replaced by GO:0052031" ;
<http://purl.org/dc/elements/1.1/title> "Il17A mediated signaling pathway (Human)"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-7646-0052"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2023-11-02"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://purl.obolibrary.org/obo/GO_0038173> a <http://www.w3.org/2002/07/owl#Class> .

Expand Down Expand Up @@ -183,9 +183,10 @@
<http://model.geneontology.org/627d95ee00001405/627d95ee00001420> <http://geneontology.org/lego/hint/layout/x> "17"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://geneontology.org/lego/hint/layout/y> "390.9999694824219"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0019049> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0052031> ;
<http://www.w3.org/2000/01/rdf-schema#comment> "Automated change 2024-12-12: GO:0019049 replaced by GO:0052031" ;
<http://purl.org/dc/elements/1.1/contributor> "https://orcid.org/0000-0001-7646-0052"^^<http://www.w3.org/2001/XMLSchema#string> ;
<http://purl.org/dc/elements/1.1/date> "2022-05-24"^^<http://www.w3.org/2001/XMLSchema#string> .
<http://purl.org/dc/elements/1.1/date> "2024-12-12"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://model.geneontology.org/627d95ee00001405/627d95ee00001421> <http://purl.org/pav/providedBy> "https://www.uniprot.org"^^<http://www.w3.org/2001/XMLSchema#string> ;
a <http://www.w3.org/2002/07/owl#NamedIndividual> , <http://purl.obolibrary.org/obo/GO_0005615> ;
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<http://purl.obolibrary.org/obo/CHEBI_2588> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.obolibrary.org/obo/GO_0019049> a <http://www.w3.org/2002/07/owl#Class> .
<http://purl.obolibrary.org/obo/GO_0052031> a <http://www.w3.org/2002/07/owl#Class> .

<http://purl.org/dc/elements/1.1/title> a <http://www.w3.org/2002/07/owl#AnnotationProperty> .

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