girder · manthey · Oct 9, 2024 · Sep 30, 2024
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -9,8 +9,11 @@ commands:
   tox:
     description: "Run tox"
     parameters:
-      env:
+      toxenv:
         type: string
+      environ:
+        type: string
+        default: ""
     steps:
       - run:
           name: Upgrade pip
@@ -25,9 +28,9 @@ commands:
           name: Run tests via tox
           # Piping through cat does less buffering of the output but can
           # consume the exit code
-          # command: PYTEST_ADDOPTS=--forked tox -e << parameters.env >> | cat; test ${PIPESTATUS[0]} -eq 0
-          # command: PYTEST_ADDOPTS="--reruns=3 --numprocesses=0" tox -e << parameters.env >> | cat; test ${PIPESTATUS[0]} -eq 0
-          command: COVERAGE_CORE=sysmon PYTEST_NUMPROCESSES=3 PYTEST_ADDOPTS="--reruns=3" tox -e << parameters.env >> | cat; test ${PIPESTATUS[0]} -eq 0
+          # command: PYTEST_ADDOPTS=--forked tox -e << parameters.toxenv >> | cat; test ${PIPESTATUS[0]} -eq 0
+          # command: PYTEST_ADDOPTS="--reruns=3 --numprocesses=0" tox -e << parameters.toxenv >> | cat; test ${PIPESTATUS[0]} -eq 0
+          command: COVERAGE_CORE=sysmon PYTEST_NUMPROCESSES=3 PYTEST_ADDOPTS="--reruns=3" << parameters.environ >> tox -e << parameters.toxenv >> | cat; test ${PIPESTATUS[0]} -eq 0
   switchpython:
     description: "Upgrade python"
     parameters:
@@ -163,7 +166,7 @@ jobs:
           version: "3.8"
           node: v14
       - tox:
-          env: test-py38
+          toxenv: test-py38
       - coverage
       - store_artifacts:
           path: build/test/artifacts
@@ -177,7 +180,7 @@ jobs:
           version: "3.9"
           node: v14
       - tox:
-          env: test-py39
+          toxenv: test-py39
       - coverage
       - store_artifacts:
           path: build/test/artifacts
@@ -191,7 +194,7 @@ jobs:
           version: "3.10"
           node: v14
       - tox:
-          env: test-py310
+          toxenv: test-py310
       - coverage
       - store_artifacts:
           path: build/test/artifacts
@@ -205,7 +208,7 @@ jobs:
           version: "3.11"
           node: v14
       - tox:
-          env: test-py311
+          toxenv: test-py311
       - coverage
       - store_artifacts:
           path: build/test/artifacts
@@ -219,7 +222,22 @@ jobs:
           version: "3.12"
           node: v14
       - tox:
-          env: test-py312
+          toxenv: test-py312
+      - coverage
+      - store_artifacts:
+          path: build/test/artifacts
+  py313:
+    machine:
+      image: ubuntu-2204:current
+    resource_class: large
+    steps:
+      - checkout
+      - allservices:
+          version: "3.13"
+          node: v14
+      - tox:
+          toxenv: test-py313
+          environ: TOX_VERBOSE=4
       - coverage
       - store_artifacts:
           path: build/test/artifacts
@@ -234,7 +252,7 @@ jobs:
           name: Permissions for link checker
           command: find /root -type d -exec chmod 755 {} \+
       - tox:
-          env: docs,lint,lintclient,notebook
+          toxenv: docs,lint,lintclient,notebook
       - store_artifacts:
           path: build/docs
       - persist_to_workspace:
@@ -246,7 +264,7 @@ jobs:
     steps:
       - checkout
       - tox:
-          env: compare-py311
+          toxenv: compare-py311
       - store_artifacts:
           path: build/tox/compare.txt
       - store_artifacts:
@@ -257,7 +275,7 @@ jobs:
     steps:
       - checkout
       - tox:
-          env: type
+          toxenv: type
   wheels:
     executor: toxandnode
     steps:
@@ -373,6 +391,13 @@ workflows:
             branches:
               ignore:
                 - gh-pages
+      - py313:
+          filters:
+            tags:
+              only: /^v.*/
+            branches:
+              ignore:
+                - gh-pages
       - lint_and_docs:
           filters:
             tags:
@@ -416,6 +441,7 @@ workflows:
             - py310
             - py311
             - py312
+            - py313
             - lint_and_docs
             - type
             - wheels
@@ -431,6 +457,7 @@ workflows:
             - py310
             - py311
             - py312
+            - py313
             - lint_and_docs
             - type
             - wheels
@@ -456,6 +483,7 @@ workflows:
       - py310
       - py311
       - py312
+      - py313
       - lint_and_docs
       - type
       - compare

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,6 +1,10 @@
 # Change Log
 
-## 1.29.12
+## 1.30.0
+
+### Features
+
+- Add support for Python 3.13 ([#1675](../../pull/1675))
 
 ### Improvements
 

diff --git a/girder/setup.py b/girder/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         'girder>=3.1.18',

diff --git a/girder_annotation/setup.py b/girder_annotation/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         'jsonschema>=2.5.1',
@@ -62,7 +63,7 @@ def prerelease_local_scheme(version):
             'pandas ; python_version < "3.9"',
             'pandas>=2.2 ; python_version >= "3.9"',
             'python-calamine ; python_version >= "3.9"',
-            'umap-learn',
+            'umap-learn ; python_version < "3.13"',
         ],
         'tasks': [
             f'girder-large-image[tasks]{limit_version}',

diff --git a/setup.py b/setup.py
@@ -102,6 +102,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         'cachetools',

diff --git a/slim.Dockerfile b/slim.Dockerfile
@@ -1,5 +1,5 @@
 # Build wheels
-FROM python:3.12.7-slim as build
+FROM python:3.12-slim as build
 
 # Need git for setuptools_scm
 RUN apt-get update \
@@ -19,7 +19,7 @@ RUN echo "pylibmc>=1.5.1\nmatplotlib\npyvips\nsimplejpeg\n" \
 
 
 # Geospatial Sources
-FROM python:3.12.7-slim as geo
+FROM python:3.12-slim as geo
 COPY --from=build /opt/build-context/wheels /opt/wheels
 LABEL maintainer="Kitware, Inc. <[email protected]>"
 LABEL repo="https://github.com/girder/large_image"
@@ -37,7 +37,7 @@ RUN pip install \
 
 
 # All Sources
-FROM python:3.12.7-slim as all
+FROM python:3.12-slim as all
 COPY --from=build /opt/build-context/wheels /opt/wheels
 LABEL maintainer="Kitware, Inc. <[email protected]>"
 LABEL repo="https://github.com/girder/large_image"
@@ -52,7 +52,7 @@ RUN pip install \
 
 
 # All Sources and Girder Packages
-FROM python:3.12.7-slim as girder
+FROM python:3.12-slim as girder
 COPY --from=build /opt/build-context/wheels /opt/wheels
 LABEL maintainer="Kitware, Inc. <[email protected]>"
 LABEL repo="https://github.com/girder/large_image"

diff --git a/sources/bioformats/setup.py b/sources/bioformats/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/deepzoom/setup.py b/sources/deepzoom/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/dicom/setup.py b/sources/dicom/setup.py
@@ -69,6 +69,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/dummy/setup.py b/sources/dummy/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/gdal/setup.py b/sources/gdal/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/mapnik/setup.py b/sources/mapnik/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/multi/setup.py b/sources/multi/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         'jsonschema',

diff --git a/sources/nd2/setup.py b/sources/nd2/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/ometiff/setup.py b/sources/ometiff/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/openjpeg/setup.py b/sources/openjpeg/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/openslide/setup.py b/sources/openslide/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/pil/setup.py b/sources/pil/setup.py
@@ -50,15 +50,16 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',
     ],
     extras_require={
         'all': [
-            'rawpy',
+            'rawpy ; python_version < "3.13"',
             'pillow-heif',
-            'pillow-jxl-plugin',
+            'pillow-jxl-plugin ; python_version < "3.13"',
             'pillow-jpls',
         ],
         'girder': f'girder-large-image{limit_version}',

diff --git a/sources/rasterio/setup.py b/sources/rasterio/setup.py
@@ -53,6 +53,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/test/setup.py b/sources/test/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/tiff/setup.py b/sources/tiff/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/tifffile/setup.py b/sources/tifffile/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/vips/setup.py b/sources/vips/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/sources/zarr/setup.py b/sources/zarr/setup.py
@@ -50,6 +50,7 @@ def prerelease_local_scheme(version):
         'Programming Language :: Python :: 3.10',
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
+        'Programming Language :: Python :: 3.13',
     ],
     install_requires=[
         f'large-image{limit_version}',

diff --git a/test.Dockerfile b/test.Dockerfile
@@ -13,7 +13,7 @@ ENV DEBIAN_FRONTEND=noninteractive \
     LANG=en_US.UTF-8 \
     PYENV_ROOT="/.pyenv" \
     PATH="/.pyenv/bin:/.pyenv/shims:$PATH" \
-    PYTHON_VERSIONS="3.11 3.8 3.9 3.10 3.12"
+    PYTHON_VERSIONS="3.11 3.8 3.9 3.10 3.12 3.13"
 
 # Consumers of this package aren't expecting an existing ubuntu user (there
 # wasn't one in the ubuntu:22.04 base)