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@graph-genome

Graph Genome Browser Consortium

Group developing a browser to scale to 1,000 genomes and zoom to chromosome scale.

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  1. component_segmentation component_segmentation Public

    Read in ODGI Bin output and identify co-linear components

    Python 3 4

  2. Schematize Schematize Public

    Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.

    JavaScript 10 8

  3. pipeline pipeline Public

    odgi - component_segmentation - Schematize

    Shell 4 2

Repositories

Showing 10 of 14 repositories
  • Schematize Public

    Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.

    graph-genome/Schematize’s past year of commit activity
    JavaScript 10 Apache-2.0 8 28 (1 issue needs help) 1 Updated Apr 23, 2024
  • graph-genome.github.io Public

    Graph Genome Documentation

    graph-genome/graph-genome.github.io’s past year of commit activity
    HTML 6 5 10 0 Updated Jun 22, 2022
  • component_segmentation Public

    Read in ODGI Bin output and identify co-linear components

    graph-genome/component_segmentation’s past year of commit activity
    Python 3 Apache-2.0 4 12 (1 issue needs help) 1 Updated Feb 17, 2021
  • pipeline Public

    odgi - component_segmentation - Schematize

    graph-genome/pipeline’s past year of commit activity
    Shell 4 2 2 (1 issue needs help) 0 Updated Feb 11, 2021
  • jbrowsing_graphs Public

    JBrowse1 utiltized on Graph Genomes

    graph-genome/jbrowsing_graphs’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Apr 6, 2020
  • jbrowse-components Public Forked from GMOD/jbrowse-components

    Reusable graphical components for genomic data

    graph-genome/jbrowse-components’s past year of commit activity
    JavaScript 2 63 0 0 Updated Feb 25, 2020
  • graph-genomics-review Public archive Forked from vgteam/graph-genomics-review

    review article on graph genomics

    graph-genome/graph-genomics-review’s past year of commit activity
    TeX 2 24 0 0 Updated Dec 5, 2019
  • graph_summarization Public archive

    Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.

    graph-genome/graph_summarization’s past year of commit activity
    Jupyter Notebook 7 1 8 2 Updated Dec 5, 2019
  • spodgi Public Forked from pangenome/spodgi

    RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)

    graph-genome/spodgi’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Nov 22, 2019
  • MoMI-G Public archive Forked from MoMI-G/MoMI-G

    Schematize is a Genome Browser for Graph Genomes. It is designed to scale to thousands of individuals and gigabase of sequence. Schematize is a fork of MoMI-G by Toshiyuki Yokoyama.

    graph-genome/MoMI-G’s past year of commit activity
    TypeScript 0 MIT 6 0 0 Updated Nov 16, 2019
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