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1. BEAST-FLOW BEAST-FLOW Public

   Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.

   Nextflow 2 1

2. WasteFlow WasteFlow Public

   Forked from BCCDC-PHL/WasteFlow

   Nextflow pipeline for pathogen surveillance in wastewater

   Nextflow

3. covflo covflo Public

   Forked from BCCDC-PHL/covflo

   Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

   Python 1

4. fluflo fluflo Public

   Forked from BCCDC-PHL/fluflo

   Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

   Nextflow

5. DiVirusity DiVirusity Public

   Quantify viral genetic diversity within hosts from NGS data (paired-end raw reads) without needing to reconstruct full-length haplotypes.

   Python 1 1

6. SNPerr SNPerr Public

   Determine read depth and variant frequency thresholds to distinguish NGS sequencing errors from true SNPs. Simulates effect of changing per-site read depth and variant frequency on accuracy of gene…

   Python