beastflow_env.yml

name: beastflow
channels:
  - defaults
  - conda-forge
  - bioconda
dependencies:
  - beagle-lib=3.1.2=hb280591_3
  - beast2=2.6.3=hf1b8bbb_0
  - bzip2=1.0.8=h1de35cc_0
  - ca-certificates=2022.2.1=hecd8cb5_0
  - certifi=2020.6.20=pyhd3eb1b0_3
  - figtree=1.4.4=hdfd78af_1
  - font-ttf-ubuntu=0.83=h8b1ccd4_0
  - fontconfig=2.13.1=ha9ee91d_0
  - freetype=2.11.0=hd8bbffd_0
  - gmp=6.2.1=h23ab428_2
  - icu=58.2=h0a44026_3
  - iqtree=2.0.3=h7eed37d_1
  - libcxx=12.0.0=h2f01273_0
  - libffi=3.3=hb1e8313_2
  - libgfortran=5.0.0=9_3_0_h6c81a4c_23
  - libgfortran5=9.3.0=h6c81a4c_23
  - libiconv=1.16=h1de35cc_0
  - libpng=1.6.37=ha441bb4_0
  - libtool=2.4.6=he9d5cce_1008
  - libxcb=1.13=h0d85af4_1004
  - libxml2=2.9.12=hcdb78fc_0
  - libzlib=1.2.11=h9173be1_1013
  - llvm-openmp=12.0.0=h0dcd299_1
  - mafft=7.490=hb4d813b_0
  - mpi=1.0=openmpi
  - ncurses=6.3=hca72f7f_2
  - openjdk=8.0.121=zulu8.20.0.5_0
  - openmpi=4.1.2=hd3cd54c_0
  - openssl=1.1.1m=hca72f7f_0
  - pthread-stubs=0.3=hdd91f34_1
  - python=3.10.0=hdfd78df_5
  - raxml-ng=1.1.0=habac362_0
  - readline=8.1.2=hca72f7f_1
  - sqlite=3.37.2=h707629a_0
  - tk=8.6.11=h7bc2e8c_0
  - tracer=1.7.2=hdfd78af_0
  - tzdata=2021e=hda174b7_0
  - wheel=0.37.1=pyhd3eb1b0_0
  - xorg-fixesproto=5.0=h0d85af4_1002
  - xorg-inputproto=2.3.2=h35c211d_1002
  - xorg-kbproto=1.0.7=h35c211d_1002
  - xorg-libx11=1.7.2=h0d85af4_0
  - xorg-libxau=1.0.9=h35c211d_0
  - xorg-libxdmcp=1.1.3=h35c211d_0
  - xorg-libxext=1.3.4=h0d85af4_1
  - xorg-libxfixes=5.0.3=h0d85af4_1004
  - xorg-libxi=1.7.10=h0d85af4_0
  - xorg-libxtst=1.2.3=h0d85af4_1002
  - xorg-recordproto=1.14.2=h0d85af4_1002
  - xorg-xextproto=7.3.0=h35c211d_1002
  - xorg-xproto=7.0.31=h9ed2024_1007
  - xz=5.2.5=h1de35cc_0
  - zlib=1.2.11=h9173be1_1013
  - pip:
    - appnope==0.1.2
    - asttokens==2.0.5
    - backcall==0.2.0
    - beast2-xml==1.0.11
    - biopython==1.79
    - bz2file==0.98
    - cachetools==5.0.0
    - charset-normalizer==2.0.12
    - cycler==0.11.0
    - cython==0.29.28
    - dark-matter==4.0.18
    - decorator==5.1.1
    - executing==0.8.3
    - fonttools==4.30.0
    - idna==3.3
    - ipython==8.1.1
    - jedi==0.18.1
    - kiwisolver==1.3.2
    - matplotlib==3.5.1
    - matplotlib-inline==0.1.3
    - mysql-connector-python==8.0.11
    - numpy==1.22.3
    - packaging==21.3
    - parso==0.8.3
    - pexpect==4.8.0
    - pickleshare==0.7.5
    - pillow==9.0.1
    - pip==21.2.4
    - progressbar2==4.0.0
    - prompt-toolkit==3.0.28
    - protobuf==3.19.4
    - ptyprocess==0.7.0
    - pure-eval==0.2.2
    - pygments==2.11.2
    - pyparsing==3.0.7
    - pysam==0.18.0
    - python-dateutil==2.8.2
    - python-utils==3.1.0
    - pyzmq==22.3.0
    - requests==2.27.1
    - setuptools==58.0.4
    - simplejson==3.17.6
    - six==1.16.0
    - stack-data==0.2.0
    - traitlets==5.1.1
    - urllib3==1.26.8
    - wcwidth==0.2.5
prefix: /Users/jessicacaleta/opt/anaconda3/envs/beastflow