Publication to cite: NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction, Ting Zhao*, Donald J. Olbris, Yang Yu and Stephen M. Plaza (2018)
NeuTu can be installed on a Mac or Linux machine. Its binary releases are available as conda packages. You can install it manually with conda commands or through the setup script.
curl -X GET https://raw.githubusercontent.com/janelia-flyem/NeuTu/develop/neurolabi/shell/setup_neutu.sh > setup_neutu.sh
bash setup_neutu.sh <install_dir> neutu-develop
Here <install_dir> is the installation directory.
Once the installation is done, you can launch the program by running
<install_dir>/bin/neutu
curl -X GET https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh > Miniconda-latest-MacOSX-x86_64.sh
bash Miniconda-latest-MacOSX-x86_64.sh
#Note: if the following command fails with some import error, you can unset PYTHONHOME and try again.
source <CONDA_ROOT>/bin/activate root
conda create -n <NAME> -c flyem-forge -c conda-forge neutu-develop
#For future update, you can run 'conda update -n <NAME> -c flyem-forge -c conda-forge neutu-develop' after activating miniconda.
Here <NAME> is the conda environment name. If you don't know what it is, just use neutu-env.
After successful installation, you should be able to lauch the application neutu.app in <CONDA_ROOT>/envs/<NAME>/bin.
curl -X GET https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh > Miniconda-latest-Linux-x86_64.sh
bash Miniconda-latest-Linux-x86_64.sh
#Assuming miniconda is installed under <CONDA_ROOT>
#Note: if the following command fails with some import error, you can unset PYTHONHOME and try again.
source <CONDA_ROOT>/bin/activate root
conda create -n <NAME> -c flyem-forge -c conda-forge neutu-develop
#For future update, you can run 'conda update -n <NAME> neutu-develop -c flyem-forge -c conda-forge neutu-develop' after activating miniconda.
Here <NAME> is the conda environment name. If you don't know what it is, just use neutu-env.
After successful installation, you can launch the program with the following commands
source <CONDA_ROOT>/bin/activate <NAME>
neutu
https://github.com/janelia-flyem/NeuTu/blob/master/neurolabi/doc/user_manual/neutu/quick_start.pdf
https://github.com/janelia-flyem/NeuTu/blob/master/neurolabi/doc/user_manual/neutu/manual.pdf