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26 Open 22 Closed
26 Open 22 Closed
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Issues list

gff error
#54 opened Oct 10, 2024 by basic99
gff_rewrite.pl stop in one place and don't move
#53 opened Feb 13, 2023 by nienie123123
Installation and running
#52 opened Apr 20, 2022 by Songhaoqiu
INSTALL.pl script error "cat:...No such file or directory"
#51 opened Feb 20, 2022 by rorycave
Running ProphET against multiple genomes
#50 opened Sep 9, 2021 by JosephWestley
Regarding attL and attR identification in predicted prophage sequence
#49 opened May 6, 2021 by shakti83kumar
GFF converter not working
#48 opened Apr 6, 2021 by hayleyjaywilson
Compatibility with Prokka generated GFF using (--compliant) option
#46 opened Oct 8, 2020 by nilesh-tawari
3
please provide a clean install
#43 opened Feb 4, 2020 by phiweger
4
What tool(s) from EMBOSS do you need?
#42 opened Oct 15, 2019 by tseemann
Missing description
#41 opened Oct 15, 2019 by tseemann
Deprecated database when using ./INSTALL.pl or ./INSTALL.pl --update_db_only
#40 opened Oct 15, 2019 by gkapatai
2
Update ProphET_standalone.pl to use RealBin
#39 opened Sep 11, 2019 by microbioticajon
4
GFFFile module
#38 opened Sep 5, 2019 by mariemh23
3
Corrupt FASTA File during install
#34 opened Oct 17, 2018 by Hana288
3
blastall error
#33 opened May 9, 2018 by yuq1993
Issue near ORI bug
#32 opened Jan 23, 2018 by gustavo11 Milestone for version 0.6
@gustavo11
Phage genome download from ncbi
#30 opened Jan 22, 2018 by ovpop100 Milestone for version 0.6
@gustavo11
5
Some of the log files are being saved in the base directory of execution and later copied to output dir bug
#23 opened Nov 27, 2017 by gustavo11 Milestone for version 0.6
@gustavo11
Adapt application to blast+ enhancement
#22 opened Nov 27, 2017 by gustavo11 Milestone for version 0.6
@gustavo11
GFF format trouble enhancement
#20 opened Oct 24, 2017 by mariemh23
@gustavo11
21
obtain_prot_with_annot_seq.pl seems to be unnecessary enhancement
#15 opened Aug 21, 2017 by gustavo11 Milestone for version 0.6
@jaumlrc
Investigate the possibility of taking output of Prokka enhancement
#11 opened Aug 21, 2017 by gustavo11 Milestone for version 0.6
@gustavo11
7
Output GFFs reporting prophage gene coordinates and annotation enhancement
#6 opened Aug 20, 2017 by gustavo11 Milestone for version 0.6
@jaumlrc
Improve graph depicting genes, genomes and predicted prophage enhancement
#5 opened Aug 17, 2017 by gustavo11 Milestone for version 0.6
@jaumlrc
ProTip! Exclude everything labeled bug with -label:bug.