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@koszullab

Romain Koszul Laboratory

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  1. instaGRAAL instaGRAAL Public

    Large genome reassembly based on Hi-C data, continuation of GRAAL

    Cuda 40 9

  2. metaTOR metaTOR Public

    Metagenomic binning based on Hi-C data

    Python 25 10

  3. hicstuff hicstuff Public

    Forked from baudrly/hicstuff

    Simple library/pipeline to generate and handle Hi-C data.

    Python 36 7

  4. chromosight chromosight Public

    Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

    Python 63 9

  5. serpentine serpentine Public

    Local, normalization-free contact map binning

    Python 5 3

Repositories

Showing 10 of 18 repositories
  • hicstuff Public Forked from baudrly/hicstuff

    Simple library/pipeline to generate and handle Hi-C data.

    koszullab/hicstuff’s past year of commit activity
    Python 36 BSD-3-Clause 8 5 0 Updated Nov 19, 2024
  • metaTOR Public

    Metagenomic binning based on Hi-C data

    koszullab/metaTOR’s past year of commit activity
    Python 25 GPL-3.0 10 1 0 Updated Nov 4, 2024
  • instaGRAAL Public

    Large genome reassembly based on Hi-C data, continuation of GRAAL

    koszullab/instaGRAAL’s past year of commit activity
    Cuda 40 GPL-3.0 9 8 0 Updated Mar 20, 2024
  • HiContacts Public Forked from js2264/HiContacts

    HiContacts: R interface to cool files and analysis of Hi-C contacts

    koszullab/HiContacts’s past year of commit activity
    R 1 1 0 0 Updated Jan 27, 2024
  • chromosight_analyses_scripts Public

    Codes used to perform analyses in the Chromosight publication

    koszullab/chromosight_analyses_scripts’s past year of commit activity
    Python 4 0 0 0 Updated Nov 17, 2023
  • transcription_T7_analysis Public Forked from ABignaud/transcription_T7_analysis

    In this repository, we present the code for the analysis of study of the transcription's impact on Escherichia coli chromosome.

    koszullab/transcription_T7_analysis’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Oct 1, 2023
  • bacchus Public Forked from ABignaud/bacchus

    Tools for analysis of BACterial Chromosome HiC data. (BACCHUS)

    koszullab/bacchus’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Sep 4, 2023
  • chromosight Public

    Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

    koszullab/chromosight’s past year of commit activity
    Python 63 9 4 0 Updated Dec 16, 2022
  • GRAAL Public

    (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)

    koszullab/GRAAL’s past year of commit activity
    Python 14 9 8 4 Updated Nov 22, 2022
  • serpentine Public

    Local, normalization-free contact map binning

    koszullab/serpentine’s past year of commit activity
    Python 5 3 0 1 Updated Oct 24, 2022
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