We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Currently, hicstuff view allows to subset either an intra-matrix for a continuous region, or an inter-matrix between two discontinous regions.
hicstuff view
@aurelepiazza suggested to add an option to subset all contacts (intra and inter) for a number of discontinuous regions in a whole map. For example:
hicstuff view -f frags.txt --multi-region 'chr1;chr3:1-100kb;chr8:100kb-400kb' mat.tsv
To obtain a map with all interactions between and within three regions on different chromossomes.
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Currently,
hicstuff view
allows to subset either an intra-matrix for a continuous region, or an inter-matrix between two discontinous regions.@aurelepiazza suggested to add an option to subset all contacts (intra and inter) for a number of discontinuous regions in a whole map. For example:
hicstuff view -f frags.txt --multi-region 'chr1;chr3:1-100kb;chr8:100kb-400kb' mat.tsv
To obtain a map with all interactions between and within three regions on different chromossomes.
The text was updated successfully, but these errors were encountered: