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v1.0.5

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@marcoteix marcoteix released this 10 Dec 16:33
· 2 commits to main since this release
v1.0.5
8c37a31

v1.0.5

This release adds workflows for transmission analysis from plate swipe data based on StrainGE.

Changes

  • Added three new workflows: GEMSTONE_StrainGR, StrainGR_prepare, and StrainGR_compare. GEMSTONE_StrainGR does pairwise comparison of genetic distances between strains in a set of plate swipes with StrainGR. StrainGR_prepare, and StrainGR_compare and two modules of GEMSTONE_StrainGR which do variant calling per sample and pairwise comparisons, respectively.
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