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14 Open 6 Closed
14 Open 6 Closed
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Issues list

Add comments in the .ipynb notebook about what each line of the query is doing and why
#34 opened Dec 4, 2024 by mslarae13
@sierra-moxon
Update .ipynb files to use ENVO IDs and not just the title.
#33 opened Dec 4, 2024 by mslarae13
@turbomam
1
get repaired environmental triad values back into MongoDB or DuckDB
#31 opened Nov 16, 2024 by turbomam
1
@turbomam
2
some scripts still access the Biosample PostgreSQL database
#25 opened Sep 4, 2024 by turbomam
@turbomam
infer Biosample's env_package
#22 opened Sep 3, 2024 by turbomam
1
@turbomam
6
update external_metadata_awareness/extract_value_set_evidence.py to find semantic similarity
#21 opened Sep 2, 2024 by turbomam
@turbomam
1
jaccard_distance in local/ncbi-mims-soil-biosamples-env_local_scale-annotated.tsv doesn't look right
#18 opened Sep 2, 2024 by turbomam
@turbomam
how many terms to display in the submission portal per env context term
#15 opened Aug 30, 2024 by aclum
review on proposed subsetting for soil env_local_scale terms
#14 opened Aug 30, 2024 by aclum
6 tasks
1
banana plantation so specific... level out with just agricultural field
#13 opened Aug 30, 2024 by turbomam
@turbomam
review anthropogenic classes in env_local_scale for soil
#12 opened Aug 30, 2024 by turbomam
5
remove semantically similar classes from candidate lists
#11 opened Aug 30, 2024 by turbomam
Add user guide to README.md documentation Improvements or additions to documentation
#2 opened Aug 21, 2024 by eecavanna
load (and analyze) EBI/ENA biosample metadata specifications (checklists, etc)
#1 opened Aug 16, 2024 by turbomam
@turbomam
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