Merge pull request #55 from microbiomedata/54-update-num_trna-to-num_…

…t_rna-in-mbin_statspy 54 update num_trna to num_t_rna in mbin statspy
microbiomedata · Oct 9, 2024 · a1bc578 · a1bc578
2 parents f4ed697 + c28dbaf
commit a1bc578
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Showing 4 changed files with 9 additions and 9 deletions.
diff --git a/Docker/Dockerfile b/Docker/Dockerfile
@@ -1,22 +1,22 @@
 FROM doejgi/mbin:v1.0.1
 ## python 3.9.12
-MAINTAINER [email protected]
 
-LABEL version="1.0.2"
+LABEL maintainer="[email protected]"
+LABEL version="1.0.3"
 LABEL software="NMDC_MAG_Pipeline"
 LABEL tags="bioinformatics"
 
 # Tell systemd we're running in Docker!
 
-ENV container docker
+ENV container="docker"
 
 
 ADD * /opt/conda/bin/
 
 
-ENV GTDBTK_DATA_PATH /databases/GTDBTK_DB
-ENV CHECKM_DATA_PATH /databases/CheckM_DB
-ENV EUKCC2_DB /databases/EUKCC2_DB
+ENV GTDBTK_DATA_PATH=/databases/GTDBTK_DB
+ENV CHECKM_DATA_PATH=/databases/CheckM_DB
+ENV EUKCC2_DB=/databases/EUKCC2_DB
 
 WORKDIR /data
 

diff --git a/Docker/mbin_stats.py b/Docker/mbin_stats.py
@@ -53,7 +53,7 @@ def mag_meta(dbname, output):
         tmp_d["num_16s"] = row[13]
         tmp_d["num_5s"] = row[14]
         tmp_d["num_23s"] = row[15]
-        tmp_d["num_tRNA"] = row[16]
+        tmp_d["num_t_rna"] = row[16]
         tmp_d["gtdbtk_domain"] = row[17]
         tmp_d["gtdbtk_phylum"] = row[18]
         tmp_d["gtdbtk_class"] = row[19]

diff --git a/mbin_nmdc.wdl b/mbin_nmdc.wdl
@@ -24,7 +24,7 @@ workflow nmdc_mags {
         String checkm_db="/refdata/checkM_DB/checkm_data_2015_01_16"
         String eukcc2_db="/refdata/EUKCC2_DB/eukcc2_db_ver_1.2"
         String package_container = "microbiomedata/nmdc_mbin_vis:0.7.0"
-        String container = "microbiomedata/nmdc_mbin@sha256:f3b154718474d2e21b53dbf4c1c35a1d3190eba3fe6b8f3fda105fcde22d9639"
+        String container = "microbiomedata/nmdc_mbin@sha256:49e218e9de783d3f307740dd02c9e0213bfaff0b8095abc89eb111a962388430"
     }
     call stage {
         input:

diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-v1.3.10
+v1.3.11