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48 updates to create tar python script and corresponding package wdl task #50

Merged
merged 7 commits into from
Aug 20, 2024
Merged

48 updates to create tar python script and corresponding package wdl task #50

merged 7 commits into from
Aug 20, 2024

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chienchi
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  • add .phylodist.txt and .crispr.txt.

  • Remove cathfunfam smart and supfam

  • example output: /global/homes/c/clo/projectsM3408/aim2/metagenome/MAGs/output

> ll nmdc_wfmag-11-ht08wa83.2_bins.76_LQ
total 132M
-rw-r----- 1 clo m3408 5.3M Aug 20 03:24 nmdc_wfmag-11-ht08wa83.2_bins.76.gene_product.txt
-rw-r----- 1 clo m3408  11M Aug 20 03:23 nmdc_wfmag-11-ht08wa83.2_bins.76.phylodist.txt
-rw-r----- 1 clo m3408 1.8K Aug 20 03:21 nmdc_wfmag-11-ht08wa83.2_bins.76.crisprs.txt
-rw-r----- 1 clo m3408 1.2M Aug 20 03:21 nmdc_wfmag-11-ht08wa83.2_bins.76.tigr.txt
-rw-r----- 1 clo m3408 5.6M Aug 20 03:20 nmdc_wfmag-11-ht08wa83.2_bins.76.pfam.txt
-rw-r----- 1 clo m3408 2.3M Aug 20 03:19 nmdc_wfmag-11-ht08wa83.2_bins.76.ko.txt
-rw-r----- 1 clo m3408 1.5M Aug 20 03:19 nmdc_wfmag-11-ht08wa83.2_bins.76.ec.txt
-rw-r----- 1 clo m3408 3.8M Aug 20 03:19 nmdc_wfmag-11-ht08wa83.2_bins.76.cog.txt
-rw-r----- 1 clo m3408  24M Aug 20 03:17 nmdc_wfmag-11-ht08wa83.2_bins.76.faa
-rw-r----- 1 clo m3408  18M Aug 20 03:15 nmdc_wfmag-11-ht08wa83.2_bins.76.gff
-rw-r----- 1 clo m3408  61M Aug 20 03:13 nmdc_wfmag-11-ht08wa83.2_bins.76.fna

@chienchi chienchi requested a review from aclum August 20, 2024 15:26
@chienchi chienchi linked an issue Aug 20, 2024 that may be closed by this pull request
updates to create tar python script and corresponding package WDL task #48
Closed
@chienchi chienchi merged commit 68e8d45 into master Aug 20, 2024
1 check passed
@chienchi chienchi deleted the 48-updates-to-create-tar-python-script-and-corresponding-package-wdl-task branch August 20, 2024 16:19
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@aclum aclum aclum approved these changes

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updates to create tar python script and corresponding package WDL task
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@chienchi @aclum