update db name to test #22
Workflow file for this run
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# This workflow will install Python dependencies, run tests and lint with a single version of Python | |
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
name: Python application | |
on: | |
push: | |
branches: [ "Refactor_fgi_file_staging_unit_tests" ] | |
pull_request: | |
branches: [ "Refactor_fgi_file_staging_unit_tests" ] | |
permissions: | |
contents: read | |
jobs: | |
build_lint_test: | |
runs-on: ubuntu-latest | |
# services: | |
# mongodb: | |
# image: mongo:latest | |
# env: | |
# MONGO_INITDB_ROOT_USERNAME: root | |
# MONGO_INITDB_ROOT_PASSWORD: password | |
# MONGO_INITDB_DATABASE: nmdc | |
# MONGO_HOST: localhost | |
# ports: | |
# - 27017:27017 | |
steps: | |
- uses: actions/checkout@v3 | |
- name: setup_mongodb | |
run: | | |
sudo docker run --rm --detach --name mongodb --publish 27017:27017 \ | |
--env MONGO_INITDB_ROOT_USERNAME=root --env MONGO_INITDB_ROOT_PASSWORD=password \ | |
--env MONGO_INITDB_DATABASE=test \ | |
mongo:latest | |
# uses: DigiPie/[email protected] | |
# with: | |
# mongodb-uri: mongodb://localhost:27017 | |
# mongodb-database: nmdc | |
# mongodb-username: root | |
# mongodb-password: password | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: "3.9" | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
- name: Install dependencies | |
run: | | |
poetry install | |
- name: Test with pytest | |
run: | | |
poetry run pytest ./tests | |