invoke docker run to set up mongodb

microbiomedata · Dec 7, 2023 · 2009934 · 2009934
1 parent da04342
commit 2009934
Showing 1 changed file with 8 additions and 6 deletions.
diff --git a/.github/workflows/blt.yml b/.github/workflows/blt.yml
@@ -29,12 +29,14 @@ jobs:
     steps:
     - uses: actions/checkout@v3
     - name: setup_mongodb
-      uses: DigiPie/[email protected]
-      with:
-        mongodb-uri: mongodb://localhost:27017
-        mongodb-database: nmdc
-        mongodb-username: root
-        mongodb-password: password
+      run: |
+        sudo docker run --rm --detach --name mongodb --publish 27017:27017 --env MONGO_INITDB_ROOT_USERNAME=root --env MONGO_INITDB_ROOT_PASSWORD=password --env MONGO_INITDB_DATABASE=nmdc mongo:latest
+#      uses: DigiPie/[email protected]
+#      with:
+#        mongodb-uri: mongodb://localhost:27017
+#        mongodb-database: nmdc
+#        mongodb-username: root
+#        mongodb-password: password
     - name: Set up Python 3.9
       uses: actions/setup-python@v3
       with: