fix incorrect update query syntax

microbiomedata · Nov 22, 2024 · ff45e20 · ff45e20
1 parent 3b7cf08
commit ff45e20
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/nmdc_automation/import_automation/activity_mapper.py b/nmdc_automation/import_automation/activity_mapper.py
@@ -120,9 +120,10 @@ def map_sequencing_data(self) -> Tuple[nmdc.Database, Dict]:
                     db.data_object_set.append(DataObject(**do_record))
                     has_output.append(data_object_id)
         update = {
-            "collection": "data_generation_set",
-            "filter": {"id": self.nucelotide_sequencing_id},
-            "update": {"$addToSet": {"has_output": has_output}}
+            "update": "data_generation_set",
+            "updates": [
+                {"q": {"id": self.nucelotide_sequencing_id}, "u": {"$addToSet": {"has_output": has_output}}}
+            ]
         }
         # update self.data_object_map
         if len(has_output) > 1: