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metaAssembly output update (v1.0.5) #189

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3 tasks

vlilanl opened this issue Jun 11, 2024 · 1 comment · May be fixed by #298

Open

3 tasks

metaAssembly output update (v1.0.5) #189

vlilanl opened this issue Jun 11, 2024 · 1 comment · May be fixed by #298

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vlilanl commented Jun 11, 2024 •

edited by aclum

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Included bbcms outputs to output section of workflow.
https://github.com/microbiomedata/metaAssembly/blob/58c8ad7868c74157bcfdd7022421aadb9d34f646/jgi_assembly.wdl#L103C11-L103C52

bump version in workflow.yaml to 1.0.5
Automation needs to be updated to record a data object of data_object_type 'Error Corrected Reads' for *__bbcms.fastq.gz
format of input.json needs to be updated to accommodate changes introduced in v1.0.4

vlilanl mentioned this issue

shortReads_assembly.wdl should output bbcms error corrected data microbiomedata/metaAssembly#18

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aclum assigned scanon and mbthornton-lbl

Contributor

aclum commented Jun 14, 2024

This is lower priority than getting annotation and binning updated.

aclum linked a pull request

that will close this issue

189 metaassembly output update v1.0.7 #298

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