Merge pull request #99 from monarch-initiative/remove-cl17543-axioms

Remove `CL:17543` axioms
monarch-initiative · Jun 19, 2023 · a4ec92f · a4ec92f
2 parents 2df24fc + 6662eb4
commit a4ec92f
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Showing 2 changed files with 1 addition and 10 deletions.
diff --git a/.github/workflows/buid_and_release.yml b/.github/workflows/buid_and_release.yml
@@ -21,7 +21,7 @@ jobs:
         python-version: '3.10'
     - name: Install
       run: |
-        python -m pip install --upgrade pip
+#        python -m pip install --upgrade pip
         make install
     - name: Create .env file
       run: |

diff --git a/omim2obo/main.py b/omim2obo/main.py
@@ -203,15 +203,6 @@ def omim2obo(use_cache: bool = False):
         if len(exact_labels) > 1:
             abbr = exact_labels.pop()
             graph.add((omim_uri, oboInOwl.hasExactSynonym, Literal(abbr)))
-
-            axiom_id = DeterministicBNode(abbr)
-            graph.add((axiom_id, RDF.type, OWL.Axiom))
-            # What's CL['0017543'] - joeflack4 2021/11/11
-            graph.add((axiom_id, OWL.annotatedSource, CL['0017543']))
-            graph.add((axiom_id, OWL.annotatedProperty, oboInOwl.hasExactSynonym))
-            graph.add((axiom_id, OWL.annotatedTarget, Literal(abbr)))
-            graph.add((axiom_id, oboInOwl.hasSynonymType, MONDONS.ABBREVIATION))
-
         for exact_label in exact_labels:
             graph.add((omim_uri, oboInOwl.hasExactSynonym, Literal(label_cleaner.clean(exact_label, abbrev))))
         for label in other_labels: